Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:85299567-88369610

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528 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nek9 12 85299514 to 85339362 39848 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 9
Tssr117065 12 85331499 to 85331502 3 - TSS region transcription start site region 117065
Cpgi4894 12 85338799 to 85339669 870 CpG island CpG island 4894
Tssr117066 12 85339316 to 85339327 11 - TSS region transcription start site region 117066
Tssr117067 12 85339346 to 85339391 45 - TSS region transcription start site region 117067
Tssr114383 12 85339430 to 85339448 18 + TSS region transcription start site region 114383
Tssr117068 12 85339498 to 85339532 34 - TSS region transcription start site region 117068
Tssr114384 12 85339696 to 85339701 5 + TSS region transcription start site region 114384
Tmed10 12 85340614 to 85374717 34103 - protein coding gene transmembrane p24 trafficking protein 10
Tssr117069 12 85341573 to 85341586 13 - TSS region transcription start site region 117069
Tssr117070 12 85341607 to 85341620 13 - TSS region transcription start site region 117070
Tssr117071 12 85344452 to 85344458 6 - TSS region transcription start site region 117071
Tssr117072 12 85344467 to 85344495 28 - TSS region transcription start site region 117072
Tssr117073 12 85350553 to 85350554 1 - TSS region transcription start site region 117073
Tssr117074 12 85350580 to 85350585 5 - TSS region transcription start site region 117074
Tssr117075 12 85350625 to 85350630 5 - TSS region transcription start site region 117075
Tssr114385 12 85351039 to 85351062 23 + TSS region transcription start site region 114385
Tssr117076 12 85351125 to 85351157 32 - TSS region transcription start site region 117076
Gm47820 12 85356584 to 85357177 593 + pseudogene predicted gene, 47820
Gm47817 12 85360493 to 85363645 3152 - unclassified gene predicted gene, 47817
Tssr117077 12 85373459 to 85373470 11 - TSS region transcription start site region 117077
Tssr117078 12 85373910 to 85373936 26 - TSS region transcription start site region 117078
Cpgi4895 12 85373975 to 85374882 907 CpG island CpG island 4895
Tssr114386 12 85374094 to 85374124 30 + TSS region transcription start site region 114386
Gm47819 12 85374117 to 85376632 2515 + antisense lncRNA gene predicted gene, 47819
Tssr114387 12 85374125 to 85374136 11 + TSS region transcription start site region 114387
Tssr3891 12 85374179 to 85374212 33 - TSS region transcription start site region 3891
Tssr114388 12 85374279 to 85374304 25 + TSS region transcription start site region 114388
Tssr117079 12 85374696 to 85374719 23 - TSS region transcription start site region 117079
Tssr114389 12 85385993 to 85386032 39 + TSS region transcription start site region 114389
Tssr114390 12 85389421 to 85389435 14 + TSS region transcription start site region 114390
Tssr114391 12 85389451 to 85389459 8 + TSS region transcription start site region 114391
Tssr117080 12 85394080 to 85394106 26 - TSS region transcription start site region 117080
Tssr3892 12 85397465 to 85397492 27 - TSS region transcription start site region 3892
Gm29709 12 85408104 to 85432615 24511 + lncRNA gene predicted gene, 29709
Gm40477 12 85429512 to 85436493 6981 - lincRNA gene predicted gene, 40477
Tssr117081 12 85430083 to 85430087 4 - TSS region transcription start site region 117081
Gm46370 12 85440663 to 85441091 428 - pseudogene predicted gene, 46370
Tssr114392 12 85447568 to 85447588 20 + TSS region transcription start site region 114392
Gm38543 12 85452051 to 85457204 5153 + lncRNA gene predicted gene, 38543
Tssr3893 12 85455164 to 85455175 11 - TSS region transcription start site region 3893
Tssr117082 12 85455179 to 85455192 13 - TSS region transcription start site region 117082
Cpgi4896 12 85455191 to 85455687 496 CpG island CpG island 4896
Tssr117083 12 85455207 to 85455218 11 - TSS region transcription start site region 117083
Tssr114393 12 85455565 to 85455606 41 + TSS region transcription start site region 114393
Tssr3894 12 85455613 to 85455628 15 + TSS region transcription start site region 3894
Tssr117084 12 85468642 to 85468651 9 - TSS region transcription start site region 117084
Tssr117085 12 85468663 to 85468668 5 - TSS region transcription start site region 117085
Tssr114394 12 85468855 to 85468867 12 + TSS region transcription start site region 114394
Tssr114395 12 85468944 to 85468965 21 + TSS region transcription start site region 114395
Tssr114396 12 85468973 to 85468988 15 + TSS region transcription start site region 114396
Tssr114397 12 85469007 to 85469014 7 + TSS region transcription start site region 114397
Tssr117086 12 85471868 to 85471891 23 - TSS region transcription start site region 117086
Cpgi4897 12 85472046 to 85472594 548 CpG island CpG island 4897
Tssr117087 12 85472188 to 85472203 15 - TSS region transcription start site region 117087
Tssr3895 12 85472324 to 85472345 21 + TSS region transcription start site region 3895
Tssr114398 12 85472357 to 85472372 15 + TSS region transcription start site region 114398
Tssr117088 12 85473348 to 85473351 3 - TSS region transcription start site region 117088
Cpgi4898 12 85473440 to 85475195 1755 CpG island CpG island 4898
Tssr114399 12 85473883 to 85473896 13 + TSS region transcription start site region 114399
Fos 12 85473901 to 85477269 3368 + protein coding gene FBJ osteosarcoma oncogene
Tssr114400 12 85474302 to 85474307 5 + TSS region transcription start site region 114400
Tssr3896 12 85474610 to 85474634 24 + TSS region transcription start site region 3896
Tssr114401 12 85474689 to 85474714 25 + TSS region transcription start site region 114401
Tssr114402 12 85474717 to 85474739 22 + TSS region transcription start site region 114402
Tssr114403 12 85475585 to 85475596 11 + TSS region transcription start site region 114403
Tssr3897 12 85475790 to 85475796 6 + TSS region transcription start site region 3897
Tssr117089 12 85475936 to 85475973 37 - TSS region transcription start site region 117089
Tssr114404 12 85476487 to 85476495 8 + TSS region transcription start site region 114404
Tssr114405 12 85476593 to 85476649 56 + TSS region transcription start site region 114405
Tssr3898 12 85476662 to 85476692 30 - TSS region transcription start site region 3898
Tssr3899 12 85476724 to 85476764 40 - TSS region transcription start site region 3899
Tssr117090 12 85477265 to 85477273 8 - TSS region transcription start site region 117090
D12Mit95 12 85478050 to 85478282 232 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 95
Tssr117091 12 85485791 to 85485807 16 - TSS region transcription start site region 117091
Cpgi4899 12 85485815 to 85486474 659 CpG island CpG island 4899
Tssr117092 12 85485928 to 85485939 11 - TSS region transcription start site region 117092
Tssr117093 12 85485955 to 85485966 11 - TSS region transcription start site region 117093
Tssr117094 12 85485980 to 85485994 14 - TSS region transcription start site region 117094
Tssr114406 12 85486229 to 85486249 20 + TSS region transcription start site region 114406
Tssr114407 12 85486271 to 85486290 19 + TSS region transcription start site region 114407
Cpgi4900 12 85486823 to 85487129 306 CpG island CpG island 4900
Tssr3900 12 85487841 to 85487853 12 - TSS region transcription start site region 3900
Tssr114408 12 85524653 to 85524664 11 + TSS region transcription start site region 114408
Tssr114409 12 85524669 to 85524683 14 + TSS region transcription start site region 114409
Tssr114410 12 85524689 to 85524713 24 + TSS region transcription start site region 114410
Tssr114411 12 85524715 to 85524742 27 + TSS region transcription start site region 114411
Tssr114412 12 85524831 to 85524841 10 + TSS region transcription start site region 114412
Gm32296 12 85529551 to 85541913 12362 + lincRNA gene predicted gene, 32296
D12Mit161 12 85561012 to 85561109 97 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 161
Gm32348 12 85569331 to 85585379 16048 + lncRNA gene predicted gene, 32348
D12Mit204 12 85580104 to 85580269 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 204
Gm47863 12 85597019 to 85599191 2172 - bidirectional promoter lncRNA gene predicted gene, 47863
Tssr114413 12 85598240 to 85598275 35 + TSS region transcription start site region 114413
Tssr114414 12 85598287 to 85598308 21 + TSS region transcription start site region 114414
Tssr114415 12 85598402 to 85598438 36 + TSS region transcription start site region 114415
Cpgi4901 12 85598530 to 85600335 1805 CpG island CpG island 4901
Tssr114416 12 85598600 to 85598607 7 + TSS region transcription start site region 114416
Tssr114417 12 85598707 to 85598735 28 + TSS region transcription start site region 114417
Jdp2 12 85599027 to 85639878 40851 + protein coding gene Jun dimerization protein 2
Tssr114418 12 85599047 to 85599090 43 + TSS region transcription start site region 114418
Tssr117095 12 85599181 to 85599243 62 - TSS region transcription start site region 117095
Tssr114419 12 85599350 to 85599362 12 + TSS region transcription start site region 114419
Tssr114420 12 85599388 to 85599407 19 + TSS region transcription start site region 114420
Tssr114421 12 85608292 to 85608304 12 + TSS region transcription start site region 114421
Tssr114422 12 85608322 to 85608340 18 + TSS region transcription start site region 114422
Tssr114423 12 85614387 to 85614390 3 + TSS region transcription start site region 114423
Tssr117096 12 85639021 to 85639046 25 - TSS region transcription start site region 117096
Tssr114424 12 85639541 to 85639560 19 + TSS region transcription start site region 114424
Gm33312 12 85662442 to 85662868 426 + pseudogene predicted gene, 33312
Tssr114425 12 85686648 to 85686702 54 + TSS region transcription start site region 114425
Tssr114426 12 85686713 to 85686728 15 + TSS region transcription start site region 114426
Batf 12 85686720 to 85709087 22367 + protein coding gene basic leucine zipper transcription factor, ATF-like
Cpgi4902 12 85705466 to 85705890 424 CpG island CpG island 4902
Tssr117097 12 85705612 to 85705618 6 - TSS region transcription start site region 117097
Tssr117098 12 85705635 to 85705674 39 - TSS region transcription start site region 117098
Tssr114427 12 85705980 to 85705983 3 + TSS region transcription start site region 114427
Tssr114428 12 85715256 to 85715258 2 + TSS region transcription start site region 114428
n-R5s64 12 85718477 to 85718595 118 - rRNA gene nuclear encoded rRNA 5S 64
Gm47285 12 85718503 to 85718563 60 - miRNA gene predicted gene, 47285
Gm47901 12 85728457 to 85728719 262 + pseudogene predicted gene, 47901
Cpgi4903 12 85745764 to 85747382 1618 CpG island CpG island 4903
Flvcr2 12 85746539 to 85813585 67046 + protein coding gene feline leukemia virus subgroup C cellular receptor 2
Tssr114429 12 85746540 to 85746551 11 + TSS region transcription start site region 114429
Tssr114430 12 85746552 to 85746572 20 + TSS region transcription start site region 114430
Tssr114431 12 85746574 to 85746604 30 + TSS region transcription start site region 114431
Tssr117099 12 85747669 to 85747678 9 - TSS region transcription start site region 117099
Tssr117100 12 85747700 to 85747709 9 - TSS region transcription start site region 117100
Gm40478 12 85753787 to 85759526 5739 - lncRNA gene predicted gene, 40478
Tssr117101 12 85759452 to 85759461 9 - TSS region transcription start site region 117101
Tssr114432 12 85759511 to 85759537 26 + TSS region transcription start site region 114432
D12Mit256.3 12 85765408 to 85765519 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 256.3
D12Mit256 12 85765494 to 85765612 118 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 256
Tssr114433 12 85774815 to 85774830 15 + TSS region transcription start site region 114433
Tssr114434 12 85814548 to 85814552 4 + TSS region transcription start site region 114434
Erg28 12 85815448 to 85824550 9102 - protein coding gene ergosterol biosynthesis 28
Tssr117102 12 85815777 to 85815812 35 - TSS region transcription start site region 117102
Tssr117103 12 85816401 to 85816418 17 - TSS region transcription start site region 117103
Tssr117104 12 85817822 to 85817837 15 - TSS region transcription start site region 117104
Tssr117105 12 85817874 to 85817892 18 - TSS region transcription start site region 117105
Tssr117106 12 85817920 to 85817933 13 - TSS region transcription start site region 117106
Cpgi4904 12 85824467 to 85825350 883 CpG island CpG island 4904
Tssr117107 12 85824496 to 85824505 9 - TSS region transcription start site region 117107
Tssr117108 12 85824506 to 85824555 49 - TSS region transcription start site region 117108
Tssr117109 12 85824560 to 85824569 9 - TSS region transcription start site region 117109
Tssr114435 12 85824633 to 85824648 15 + TSS region transcription start site region 114435
Tssr117110 12 85824845 to 85824889 44 - TSS region transcription start site region 117110
Tssr114436 12 85824918 to 85825009 91 + TSS region transcription start site region 114436
Ttll5 12 85824920 to 86053760 228840 + protein coding gene tubulin tyrosine ligase-like family, member 5
Tssr114437 12 85904235 to 85904249 14 + TSS region transcription start site region 114437
Tssr114438 12 85956405 to 85956415 10 + TSS region transcription start site region 114438
Tssr114439 12 85956437 to 85956452 15 + TSS region transcription start site region 114439
Tssr114440 12 85960280 to 85960291 11 + TSS region transcription start site region 114440
Tssr114441 12 85960406 to 85960409 3 + TSS region transcription start site region 114441
Gm26531 12 85962598 to 85979021 16423 - antisense lncRNA gene predicted gene, 26531
Cpgi4905 12 85963950 to 85964200 250 CpG island CpG island 4905
Tssr117111 12 85973677 to 85973686 9 - TSS region transcription start site region 117111
Tssr114442 12 85987964 to 85987970 6 + TSS region transcription start site region 114442
Tssr117112 12 86042787 to 86042809 22 - TSS region transcription start site region 117112
D12Mit138 12 86055125 to 86055274 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 138
Tgfb3 12 86056745 to 86079041 22296 - protein coding gene transforming growth factor, beta 3
Tssr114443 12 86060963 to 86060989 26 + TSS region transcription start site region 114443
Gm37804 12 86069173 to 86069779 606 + unclassified gene predicted gene, 37804
Gm48008 12 86078644 to 86079754 1110 + unclassified non-coding RNA gene predicted gene, 48008
Cpgi4906 12 86078684 to 86079023 339 CpG island CpG island 4906
Tssr117113 12 86078800 to 86078804 4 - TSS region transcription start site region 117113
Tssr117114 12 86078903 to 86078941 38 - TSS region transcription start site region 117114
Tssr117115 12 86079019 to 86079035 16 - TSS region transcription start site region 117115
Cpgi4907 12 86079269 to 86079720 451 CpG island CpG island 4907
Cpgi4908 12 86082457 to 86082866 409 CpG island CpG island 4908
Ift43 12 86082541 to 86162459 79918 + protein coding gene intraflagellar transport 43
Tssr114444 12 86082555 to 86082603 48 + TSS region transcription start site region 114444
D12Mit206 12 86121555 to 86121661 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 206
Cpgi4909 12 86158797 to 86159067 270 CpG island CpG island 4909
Gm805 12 86169341 to 86195102 25761 + lincRNA gene predicted gene 805
Gm32473 12 86183411 to 86190269 6858 - lncRNA gene predicted gene, 32473
Cpgi4910 12 86211095 to 86211373 278 CpG island CpG island 4910
Gm40481 12 86215976 to 86241806 25830 - lncRNA gene predicted gene, 40481
Cpgi4911 12 86216796 to 86217019 223 CpG island CpG island 4911
Cpgi4912 12 86220737 to 86220968 231 CpG island CpG island 4912
Cpgi4913 12 86241664 to 86242503 839 CpG island CpG island 4913
Tssr117116 12 86241679 to 86241687 8 - TSS region transcription start site region 117116
Tssr114445 12 86241848 to 86241936 88 + TSS region transcription start site region 114445
Gpatch2l 12 86241858 to 86291784 49926 + protein coding gene G patch domain containing 2 like
Tssr3901 12 86242737 to 86242747 10 - TSS region transcription start site region 3901
Tssr114446 12 86275803 to 86275808 5 + TSS region transcription start site region 114446
4732487G21Rik 12 86290761 to 86306006 15245 - lincRNA gene RIKEN cDNA 4732487G21 gene
Gm32666 12 86309088 to 86311260 2172 + lncRNA gene predicted gene, 32666
Gm48101 12 86347977 to 86348097 120 + pseudogene predicted gene, 48101
D12Mit205 12 86349301 to 86349421 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 205
Gm40483 12 86359049 to 86361172 2123 - lncRNA gene predicted gene, 40483
Tssr114447 12 86361112 to 86361131 19 + TSS region transcription start site region 114447
Esrrb 12 86361117 to 86521628 160511 + protein coding gene estrogen related receptor, beta
Tssr114448 12 86361430 to 86361444 14 + TSS region transcription start site region 114448
Tssr114449 12 86361458 to 86361469 11 + TSS region transcription start site region 114449
Tssr114450 12 86361489 to 86361499 10 + TSS region transcription start site region 114450
Cpgi4914 12 86379770 to 86379956 186 CpG island CpG island 4914
D12Mit193 12 86381525 to 86381753 228 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 193
Cpgi4915 12 86402703 to 86403102 399 CpG island CpG island 4915
Cpgi4916 12 86421450 to 86423312 1862 CpG island CpG island 4916