Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:104856077-105206141

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clmn 12 104763117 to 104865076 101959 - protein coding gene calmin
Tssr117583 12 104856492 to 104856505 13 - TSS region transcription start site region 117583
Tssr117584 12 104856629 to 104856636 7 - TSS region transcription start site region 117584
Tssr114888 12 104857079 to 104857085 6 + TSS region transcription start site region 114888
4930408O17Rik 12 104857371 to 104871535 14164 + lincRNA gene RIKEN cDNA 4930408O17 gene
Tssr114889 12 104862066 to 104862076 10 + TSS region transcription start site region 114889
Tssr3933 12 104862089 to 104862096 7 + TSS region transcription start site region 3933
Cpgi5036 12 104864389 to 104865635 1246 CpG island CpG island 5036
Tssr117585 12 104864957 to 104864991 34 - TSS region transcription start site region 117585
Tssr117586 12 104865007 to 104865029 22 - TSS region transcription start site region 117586
Tssr117587 12 104865038 to 104865052 14 - TSS region transcription start site region 117587
Tssr117588 12 104865082 to 104865138 56 - TSS region transcription start site region 117588
Tssr117589 12 104865150 to 104865163 13 - TSS region transcription start site region 117589
Tssr117590 12 104865189 to 104865198 9 - TSS region transcription start site region 117590
Tssr114890 12 104865376 to 104865400 24 + TSS region transcription start site region 114890
Gm28875 12 104925501 to 104926689 1188 - lincRNA gene predicted gene 28875
Tssr117591 12 104926836 to 104926839 3 - TSS region transcription start site region 117591
Syne3 12 104929933 to 105009809 79876 - protein coding gene spectrin repeat containing, nuclear envelope family member 3
Tssr117592 12 104930051 to 104930074 23 - TSS region transcription start site region 117592
Tssr3934 12 104956259 to 104956262 3 - TSS region transcription start site region 3934
Tssr117593 12 104988270 to 104988273 3 - TSS region transcription start site region 117593
Tssr3935 12 104988762 to 104988766 4 - TSS region transcription start site region 3935
Tssr114891 12 104992583 to 104992594 11 + TSS region transcription start site region 114891
Tssr117594 12 104998682 to 104998710 28 - TSS region transcription start site region 117594
Tssr114892 12 105001198 to 105001247 49 + TSS region transcription start site region 114892
Tssr114893 12 105003443 to 105003461 18 + TSS region transcription start site region 114893
Gm31742 12 105003565 to 105007957 4392 + lncRNA gene predicted gene, 31742
Tssr117595 12 105006872 to 105006876 4 - TSS region transcription start site region 117595
Cpgi5037 12 105009405 to 105010415 1010 CpG island CpG island 5037
Tssr117596 12 105010005 to 105010021 16 - TSS region transcription start site region 117596
Tssr117597 12 105010023 to 105010059 36 - TSS region transcription start site region 117597
Tssr117598 12 105010062 to 105010086 24 - TSS region transcription start site region 117598
Gm46375 12 105012683 to 105023679 10996 - lncRNA gene predicted gene, 46375
Tssr3936 12 105013113 to 105013140 27 - TSS region transcription start site region 3936
Tssr114894 12 105019496 to 105019506 10 + TSS region transcription start site region 114894
Tssr114895 12 105019531 to 105019557 26 + TSS region transcription start site region 114895
Tssr114896 12 105020113 to 105020143 30 + TSS region transcription start site region 114896
Gm47648 12 105021359 to 105029936 8577 + lincRNA gene predicted gene, 47648
Gm47650 12 105027642 to 105027963 321 - pseudogene predicted gene, 47650
Snhg10 12 105030617 to 105032279 1662 - lncRNA gene small nucleolar RNA host gene 10
Scarna13 12 105031075 to 105031349 274 - snoRNA gene small Cajal body-specific RNA 1
Mir3069 12 105031077 to 105031141 64 - miRNA gene microRNA 3069
Cpgi5038 12 105032019 to 105033250 1231 CpG island CpG island 5038
Tssr117599 12 105032056 to 105032060 4 - TSS region transcription start site region 117599
Tssr117600 12 105032240 to 105032258 18 - TSS region transcription start site region 117600
Tssr117601 12 105032261 to 105032307 46 - TSS region transcription start site region 117601
Glrx5 12 105032618 to 105040911 8293 + protein coding gene glutaredoxin 5
Tssr114897 12 105032638 to 105032705 67 + TSS region transcription start site region 114897
Gm46374 12 105036168 to 105040268 4100 - lncRNA gene predicted gene, 46374
D12Mit29 12 105039595 to 105039857 262 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 29
Gm31884 12 105047904 to 105053457 5553 + lncRNA gene predicted gene, 31884
Gm31829 12 105058207 to 105102983 44776 - lncRNA gene predicted gene, 31829
Chlq17 12 105086615 to 105086762 147 QTL circulating hormone level QTL 17
D12Mit167 12 105086615 to 105086762 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 167
Lifespan3 12 105086615 to 105086762 147 QTL life span 3
Gm32062 12 105120261 to 105138103 17842 + lncRNA gene predicted gene, 32062
Gm47672 12 105135196 to 105135441 245 + pseudogene predicted gene, 47672
Tcl1b2 12 105147012 to 105155225 8213 + protein coding gene T cell leukemia/lymphoma 1B, 2
Tcl1b1 12 105159704 to 105166625 6921 + protein coding gene T cell leukemia/lymphoma 1B, 1
Tcl1b5 12 105176358 to 105181145 4787 + protein coding gene T cell leukemia/lymphoma 1B, 5
Tcl1b3 12 105191045 to 105195399 4354 + protein coding gene T cell leukemia/lymphoma 1B, 3
Tcl1b4 12 105201957 to 105206993 5036 + protein coding gene T cell leukemia/lymphoma 1B, 4