Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:103386679-103716720

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5021 12 103388545 to 103389481 936 CpG island CpG island 5021
Tssr114807 12 103388656 to 103388723 67 + TSS region transcription start site region 114807
Otub2 12 103388682 to 103406350 17668 + protein coding gene OTU domain, ubiquitin aldehyde binding 2
Tssr114808 12 103388727 to 103388765 38 + TSS region transcription start site region 114808
Tssr117476 12 103391553 to 103391557 4 - TSS region transcription start site region 117476
Tssr114809 12 103393878 to 103393889 11 + TSS region transcription start site region 114809
9330161L09Rik 12 103406822 to 103407820 998 - unclassified gene RIKEN cDNA 9330161L09 gene
Ddx24 12 103407982 to 103425830 17848 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
Gm47260 12 103412492 to 103415596 3104 - unclassified gene predicted gene, 47260
Tssr117477 12 103416223 to 103416243 20 - TSS region transcription start site region 117477
Cpgi5022 12 103425349 to 103426122 773 CpG island CpG island 5022
Tssr117478 12 103425803 to 103425855 52 - TSS region transcription start site region 117478
Gm40560 12 103429650 to 103431451 1801 - lncRNA gene predicted gene, 40560
Ifi27 12 103434211 to 103440239 6028 + protein coding gene interferon, alpha-inducible protein 27
Tssr114810 12 103434214 to 103434281 67 + TSS region transcription start site region 114810
Ifi27l2a 12 103442167 to 103443680 1513 - protein coding gene interferon, alpha-inducible protein 27 like 2A
Tssr114811 12 103442317 to 103442346 29 + TSS region transcription start site region 114811
Tssr117479 12 103442359 to 103442378 19 - TSS region transcription start site region 117479
Tssr117480 12 103443653 to 103443673 20 - TSS region transcription start site region 117480
Ifi27l2b 12 103450898 to 103457223 6325 - protein coding gene interferon, alpha-inducible protein 27 like 2B
Tssr114812 12 103451092 to 103451132 40 + TSS region transcription start site region 114812
Tssr117481 12 103457188 to 103457192 4 - TSS region transcription start site region 117481
Tssr117482 12 103457195 to 103457270 75 - TSS region transcription start site region 117482
Tssr117483 12 103457278 to 103457282 4 - TSS region transcription start site region 117483
Gm47267 12 103483442 to 103486681 3239 + lincRNA gene predicted gene, 47267
Cpgi5023 12 103531978 to 103533403 1425 CpG island CpG island 5023
Ppp4r4 12 103532283 to 103613831 81548 + protein coding gene protein phosphatase 4, regulatory subunit 4
Tssr114813 12 103532435 to 103532485 50 + TSS region transcription start site region 114813
Tssr114814 12 103532486 to 103532503 17 + TSS region transcription start site region 114814
Tssr114815 12 103550359 to 103550363 4 + TSS region transcription start site region 114815
Tssr114816 12 103551679 to 103551720 41 + TSS region transcription start site region 114816
Tssr117484 12 103609790 to 103609803 13 - TSS region transcription start site region 117484
Serpina10 12 103616675 to 103631490 14815 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
Tssr117485 12 103631404 to 103631444 40 - TSS region transcription start site region 117485
Tssr114817 12 103640424 to 103640428 4 + TSS region transcription start site region 114817
Gm18501 12 103641406 to 103642069 663 - pseudogene predicted gene, 18501
Serpina6 12 103646630 to 103657212 10582 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 6
Tnfp 12 103646630 to 103657212 10582 QTL tumor necrosis factor protection
Tssr117486 12 103646989 to 103647001 12 - TSS region transcription start site region 117486
Tssr117487 12 103653491 to 103653501 10 - TSS region transcription start site region 117487
Tssr117488 12 103655052 to 103655078 26 - TSS region transcription start site region 117488
Tssr117489 12 103655857 to 103655896 39 - TSS region transcription start site region 117489
Tssr117490 12 103656365 to 103656403 38 - TSS region transcription start site region 117490
Tssr117491 12 103657095 to 103657112 17 - TSS region transcription start site region 117491
Tssr117492 12 103657123 to 103657134 11 - TSS region transcription start site region 117492
Tssr117493 12 103657159 to 103657170 11 - TSS region transcription start site region 117493
Tssr117494 12 103659889 to 103659910 21 - TSS region transcription start site region 117494
Serpina16 12 103668808 to 103676139 7331 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16
Tssr117495 12 103676718 to 103676729 11 - TSS region transcription start site region 117495
Tssr117496 12 103676765 to 103676773 8 - TSS region transcription start site region 117496
Gm46373 12 103681704 to 103688918 7214 + lncRNA gene predicted gene, 46373
Serpina1f 12 103688044 to 103695529 7485 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1F
Tssr117497 12 103694032 to 103694049 17 - TSS region transcription start site region 117497
Tssr117498 12 103694657 to 103694673 16 - TSS region transcription start site region 117498
Tssr117499 12 103694674 to 103694680 6 - TSS region transcription start site region 117499
Tssr117500 12 103694686 to 103694703 17 - TSS region transcription start site region 117500
Tssr117501 12 103694713 to 103694718 5 - TSS region transcription start site region 117501
Tssr117502 12 103695017 to 103695023 6 - TSS region transcription start site region 117502
Tssr117503 12 103695439 to 103695454 15 - TSS region transcription start site region 117503
Tssr117504 12 103695527 to 103695536 9 - TSS region transcription start site region 117504
Tssr117505 12 103695580 to 103695592 12 - TSS region transcription start site region 117505
Tssr117506 12 103701126 to 103701131 5 - TSS region transcription start site region 117506
Tssr117507 12 103701177 to 103701184 7 - TSS region transcription start site region 117507
Gm5656 12 103702271 to 103704598 2327 - pseudogene predicted gene 5656
Tssr117508 12 103707305 to 103707314 9 - TSS region transcription start site region 117508
Gm17142 12 103714549 to 103716697 2148 - pseudogene predicted gene 17142