Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:102427750-102867751

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssrq6 12 100565816 to 102495006 1929190 QTL stress response QTL 6
Lgmn 12 102394082 to 102439808 45726 - protein coding gene legumain
Tssr117420 12 102435850 to 102435854 4 - TSS region transcription start site region 117420
Tssr117421 12 102437182 to 102437185 3 - TSS region transcription start site region 117421
Tssr117422 12 102439090 to 102439099 9 - TSS region transcription start site region 117422
Cpgi5006 12 102439461 to 102440080 619 CpG island CpG island 5006
Tssr114760 12 102439640 to 102439641 1 + TSS region transcription start site region 114760
Tssr117423 12 102439658 to 102439737 79 - TSS region transcription start site region 117423
Tssr117424 12 102439744 to 102439758 14 - TSS region transcription start site region 117424
Tssr117425 12 102439810 to 102439821 11 - TSS region transcription start site region 117425
Tssr117426 12 102439823 to 102439836 13 - TSS region transcription start site region 117426
A930036A04Rik 12 102440722 to 102441771 1049 unclassified gene RIKEN cDNA A930036A04 gene
Cpgi5007 12 102442474 to 102442838 364 CpG island CpG island 5007
Gm30198 12 102447328 to 102467609 20281 + lincRNA gene predicted gene, 30198
Cpgi5008 12 102468865 to 102469722 857 CpG island CpG island 5008
Tssr114761 12 102469123 to 102469156 33 + TSS region transcription start site region 114761
Golga5 12 102469135 to 102497907 28772 + protein coding gene golgi autoantigen, golgin subfamily a, 5
Tssr114762 12 102469166 to 102469181 15 + TSS region transcription start site region 114762
Tssr114763 12 102469227 to 102469318 91 + TSS region transcription start site region 114763
D12Mit101 12 102494840 to 102495006 166 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 101
Tssr117427 12 102495520 to 102495546 26 - TSS region transcription start site region 117427
D12Mit292 12 102548025 to 102548176 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 292
Tssr114764 12 102554229 to 102554259 30 + TSS region transcription start site region 114764
Cpgi5009 12 102554599 to 102555550 951 CpG island CpG island 5009
Tssr114765 12 102554966 to 102554984 18 + TSS region transcription start site region 114765
Chga 12 102554969 to 102565028 10059 + protein coding gene chromogranin A
Tssr114766 12 102561827 to 102561840 13 + TSS region transcription start site region 114766
Tssr117428 12 102561951 to 102561986 35 - TSS region transcription start site region 117428
Tssr114767 12 102562593 to 102562628 35 + TSS region transcription start site region 114767
Itpk1 12 102568583 to 102704869 136286 - protein coding gene inositol 1,3,4-triphosphate 5/6 kinase
Cpgi5010 12 102570215 to 102570395 180 CpG island CpG island 5010
Gm37019 12 102589277 to 102591410 2133 - unclassified gene predicted gene, 37019
Tssr117429 12 102591314 to 102591317 3 - TSS region transcription start site region 117429
Tssr114768 12 102612678 to 102612688 10 + TSS region transcription start site region 114768
Gm20069 12 102612680 to 102618516 5836 + antisense lncRNA gene predicted gene, 20069
Tssr117430 12 102623378 to 102623404 26 - TSS region transcription start site region 117430
Tssr117431 12 102631886 to 102631914 28 - TSS region transcription start site region 117431
Tssr114769 12 102647023 to 102647050 27 + TSS region transcription start site region 114769
Tssr117432 12 102647750 to 102647751 1 - TSS region transcription start site region 117432
Tssr117433 12 102652640 to 102652652 12 - TSS region transcription start site region 117433
Tssr117434 12 102653302 to 102653315 13 - TSS region transcription start site region 117434
Tssr117435 12 102653326 to 102653337 11 - TSS region transcription start site region 117435
Tssr117436 12 102657862 to 102657871 9 - TSS region transcription start site region 117436
Tssr117437 12 102657892 to 102657906 14 - TSS region transcription start site region 117437
Gm28373 12 102673017 to 102727333 54316 - unclassified non-coding RNA gene predicted gene 28373
Tssr117438 12 102673592 to 102673601 9 - TSS region transcription start site region 117438
Mir1936 12 102684928 to 102685020 92 - miRNA gene microRNA 1936
Tssr117439 12 102695549 to 102695582 33 - TSS region transcription start site region 117439
Gm40559 12 102695895 to 102702318 6423 + lncRNA gene predicted gene, 40559
Cpgi5011 12 102704049 to 102705830 1781 CpG island CpG island 5011
Tssr117440 12 102704896 to 102704980 84 - TSS region transcription start site region 117440
Gm30296 12 102710206 to 102733930 23724 + lncRNA gene predicted gene, 30296
Gm28051 12 102719975 to 102757765 37790 - protein coding gene predicted gene, 28051
Gm21971 12 102719977 to 102727322 7345 - lincRNA gene predicted gene 21971
Tssr117441 12 102727332 to 102727354 22 - TSS region transcription start site region 117441
Tssr117442 12 102730414 to 102730428 14 - TSS region transcription start site region 117442
Tssr114770 12 102730701 to 102730717 16 + TSS region transcription start site region 114770
Gm20604 12 102741732 to 102758672 16940 - protein coding gene predicted gene 20604
Moap1 12 102742230 to 102743661 1431 - protein coding gene modulator of apoptosis 1
Cpgi5012 12 102743084 to 102744146 1062 CpG island CpG island 5012
Tssr3927 12 102743598 to 102743613 15 - TSS region transcription start site region 3927
Tssr117443 12 102743625 to 102743688 63 - TSS region transcription start site region 117443
Tssr114771 12 102743699 to 102743711 12 + TSS region transcription start site region 114771
Tssr114772 12 102743712 to 102743747 35 + TSS region transcription start site region 114772
Tmem251 12 102743712 to 102745406 1694 + protein coding gene transmembrane protein 251
Tssr114773 12 102743750 to 102743776 26 + TSS region transcription start site region 114773
Tssr114774 12 102743791 to 102743802 11 + TSS region transcription start site region 114774
Tssr114775 12 102743975 to 102743985 10 + TSS region transcription start site region 114775
Tssr114776 12 102743992 to 102744008 16 + TSS region transcription start site region 114776
Tssr114777 12 102744021 to 102744047 26 + TSS region transcription start site region 114777
Gon7 12 102753275 to 102757803 4528 - protein coding gene GON7, KEOPS complex subunit homolog
Cpgi5013 12 102757227 to 102758443 1216 CpG island CpG island 5013
Tssr117444 12 102757690 to 102757695 5 - TSS region transcription start site region 117444
Tssr114778 12 102757748 to 102757759 11 + TSS region transcription start site region 114778
Tssr117445 12 102757750 to 102757759 9 - TSS region transcription start site region 117445
Tssr114779 12 102757765 to 102757776 11 + TSS region transcription start site region 114779
Tssr117446 12 102757769 to 102757809 40 - TSS region transcription start site region 117446
Tssr114780 12 102757782 to 102757798 16 + TSS region transcription start site region 114780
Tssr114781 12 102757936 to 102757954 18 + TSS region transcription start site region 114781
Tssr114782 12 102757965 to 102758010 45 + TSS region transcription start site region 114782
Ubr7 12 102757975 to 102777701 19726 + protein coding gene ubiquitin protein ligase E3 component n-recognin 7 (putative)
Tssr114783 12 102758012 to 102758024 12 + TSS region transcription start site region 114783
Gm47042 12 102764323 to 102764712 389 - pseudogene predicted gene, 47042
Btbd7 12 102780797 to 102878471 97674 - protein coding gene BTB (POZ) domain containing 7
Gm20079 12 102797377 to 102799441 2064 - pseudogene predicted gene, 20079
Tssr117447 12 102818345 to 102818348 3 - TSS region transcription start site region 117447
Gm47167 12 102838108 to 102874891 36783 + antisense lncRNA gene predicted gene, 47167
Tssr117448 12 102855748 to 102855785 37 - TSS region transcription start site region 117448
Gm47166 12 102859741 to 102861449 1708 - unclassified gene predicted gene, 47166
Tssr117449 12 102860300 to 102860302 2 - TSS region transcription start site region 117449
Gm7143 12 102866631 to 102867489 858 - pseudogene predicted gene 7143