Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:102375520-102615546

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssrq6 12 100565816 to 102495006 1929190 QTL stress response QTL 6
Rin3 12 102283048 to 102390855 107807 + protein coding gene Ras and Rab interactor 3
Tssr114753 12 102377163 to 102377164 1 + TSS region transcription start site region 114753
Tssr114754 12 102383879 to 102383939 60 + TSS region transcription start site region 114754
Cpgi5005 12 102389816 to 102390134 318 CpG island CpG island 5005
Tssr114755 12 102391349 to 102391351 2 + TSS region transcription start site region 114755
Lgmn 12 102394082 to 102439808 45726 - protein coding gene legumain
Tssr117398 12 102395676 to 102395711 35 - TSS region transcription start site region 117398
Tssr114756 12 102398218 to 102398264 46 + TSS region transcription start site region 114756
Tssr117399 12 102398319 to 102398338 19 - TSS region transcription start site region 117399
Tssr114757 12 102398323 to 102398357 34 + TSS region transcription start site region 114757
Tssr117400 12 102398381 to 102398390 9 - TSS region transcription start site region 117400
Tssr117401 12 102399940 to 102399972 32 - TSS region transcription start site region 117401
Tssr117402 12 102399978 to 102399998 20 - TSS region transcription start site region 117402
Tssr117403 12 102400168 to 102400213 45 - TSS region transcription start site region 117403
Tssr114758 12 102400176 to 102400208 32 + TSS region transcription start site region 114758
Tssr117404 12 102400216 to 102400242 26 - TSS region transcription start site region 117404
Tssr117405 12 102401560 to 102401571 11 - TSS region transcription start site region 117405
Tssr117406 12 102401593 to 102401604 11 - TSS region transcription start site region 117406
Tssr117407 12 102401621 to 102401633 12 - TSS region transcription start site region 117407
Tssr117408 12 102401645 to 102401662 17 - TSS region transcription start site region 117408
Tssr114759 12 102401874 to 102401911 37 + TSS region transcription start site region 114759
Tssr117409 12 102403474 to 102403512 38 - TSS region transcription start site region 117409
Tssr117410 12 102404281 to 102404296 15 - TSS region transcription start site region 117410
Tssr117411 12 102404319 to 102404352 33 - TSS region transcription start site region 117411
Tssr117412 12 102404706 to 102404709 3 - TSS region transcription start site region 117412
Tssr117413 12 102405482 to 102405487 5 - TSS region transcription start site region 117413
Tssr117414 12 102413552 to 102413570 18 - TSS region transcription start site region 117414
Tssr117415 12 102421330 to 102421341 11 - TSS region transcription start site region 117415
Tssr117416 12 102421398 to 102421420 22 - TSS region transcription start site region 117416
Tssr117417 12 102421441 to 102421455 14 - TSS region transcription start site region 117417
Tssr117418 12 102421515 to 102421526 11 - TSS region transcription start site region 117418
Tssr3925 12 102423679 to 102423695 16 - TSS region transcription start site region 3925
Tssr3926 12 102423725 to 102423740 15 - TSS region transcription start site region 3926
Tssr117419 12 102423741 to 102423774 33 - TSS region transcription start site region 117419
Tssr117420 12 102435850 to 102435854 4 - TSS region transcription start site region 117420
Tssr117421 12 102437182 to 102437185 3 - TSS region transcription start site region 117421
Tssr117422 12 102439090 to 102439099 9 - TSS region transcription start site region 117422
Cpgi5006 12 102439461 to 102440080 619 CpG island CpG island 5006
Tssr114760 12 102439640 to 102439641 1 + TSS region transcription start site region 114760
Tssr117423 12 102439658 to 102439737 79 - TSS region transcription start site region 117423
Tssr117424 12 102439744 to 102439758 14 - TSS region transcription start site region 117424
Tssr117425 12 102439810 to 102439821 11 - TSS region transcription start site region 117425
Tssr117426 12 102439823 to 102439836 13 - TSS region transcription start site region 117426
A930036A04Rik 12 102440722 to 102441771 1049 unclassified gene RIKEN cDNA A930036A04 gene
Cpgi5007 12 102442474 to 102442838 364 CpG island CpG island 5007
Gm30198 12 102447328 to 102467609 20281 + lincRNA gene predicted gene, 30198
Cpgi5008 12 102468865 to 102469722 857 CpG island CpG island 5008
Tssr114761 12 102469123 to 102469156 33 + TSS region transcription start site region 114761
Golga5 12 102469135 to 102497907 28772 + protein coding gene golgi autoantigen, golgin subfamily a, 5
Tssr114762 12 102469166 to 102469181 15 + TSS region transcription start site region 114762
Tssr114763 12 102469227 to 102469318 91 + TSS region transcription start site region 114763
D12Mit101 12 102494840 to 102495006 166 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 101
Tssr117427 12 102495520 to 102495546 26 - TSS region transcription start site region 117427
D12Mit292 12 102548025 to 102548176 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 292
Tssr114764 12 102554229 to 102554259 30 + TSS region transcription start site region 114764
Cpgi5009 12 102554599 to 102555550 951 CpG island CpG island 5009
Tssr114765 12 102554966 to 102554984 18 + TSS region transcription start site region 114765
Chga 12 102554969 to 102565028 10059 + protein coding gene chromogranin A
Tssr114766 12 102561827 to 102561840 13 + TSS region transcription start site region 114766
Tssr117428 12 102561951 to 102561986 35 - TSS region transcription start site region 117428
Tssr114767 12 102562593 to 102562628 35 + TSS region transcription start site region 114767
Itpk1 12 102568583 to 102704869 136286 - protein coding gene inositol 1,3,4-triphosphate 5/6 kinase
Cpgi5010 12 102570215 to 102570395 180 CpG island CpG island 5010
Gm37019 12 102589277 to 102591410 2133 - unclassified gene predicted gene, 37019
Tssr117429 12 102591314 to 102591317 3 - TSS region transcription start site region 117429
Tssr114768 12 102612678 to 102612688 10 + TSS region transcription start site region 114768
Gm20069 12 102612680 to 102618516 5836 + antisense lncRNA gene predicted gene, 20069