Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:100641365-101981460

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rps6ka5 12 100549778 to 100725395 175617 - protein coding gene ribosomal protein S6 kinase, polypeptide 5
Cpgi4990 12 100724306 to 100725674 1368 CpG island CpG island 4990
Tssr117326 12 100724993 to 100725002 9 - TSS region transcription start site region 117326
Tssr117327 12 100725058 to 100725081 23 - TSS region transcription start site region 117327
Tssr114711 12 100729386 to 100729392 6 + TSS region transcription start site region 114711
Gm2614 12 100744533 to 100744935 402 - pseudogene predicted gene 2614
Tssr117328 12 100744963 to 100744965 2 - TSS region transcription start site region 117328
Gm40558 12 100763409 to 100777745 14336 + lncRNA gene predicted gene, 40558
Gm25801 12 100769023 to 100769128 105 - snRNA gene predicted gene, 25801
Tssr114712 12 100779055 to 100779065 10 + TSS region transcription start site region 114712
Dglucy 12 100779071 to 100872610 93539 + protein coding gene D-glutamate cyclase
Tssr114713 12 100779074 to 100779085 11 + TSS region transcription start site region 114713
Tssr114714 12 100779088 to 100779101 13 + TSS region transcription start site region 114714
Tssr114715 12 100779105 to 100779137 32 + TSS region transcription start site region 114715
Tssr114716 12 100779140 to 100779156 16 + TSS region transcription start site region 114716
Tssr117329 12 100837414 to 100837433 19 - TSS region transcription start site region 117329
Tssr114717 12 100856074 to 100856082 8 + TSS region transcription start site region 114717
Gm48771 12 100862786 to 100864689 1903 + unclassified gene predicted gene, 48771
Gm8482 12 100863969 to 100864439 470 - pseudogene predicted pseudogene 8482
Gpr68 12 100876682 to 100908198 31516 - protein coding gene G protein-coupled receptor 68
Tssr114718 12 100885872 to 100885881 9 + TSS region transcription start site region 114718
Tssr117330 12 100887836 to 100887864 28 - TSS region transcription start site region 117330
Tssr117331 12 100887870 to 100887887 17 - TSS region transcription start site region 117331
Tssr117332 12 100887890 to 100887901 11 - TSS region transcription start site region 117332
Tssr117333 12 100887925 to 100887936 11 - TSS region transcription start site region 117333
Tssr117334 12 100887951 to 100887958 7 - TSS region transcription start site region 117334
Tssr117335 12 100888026 to 100888037 11 - TSS region transcription start site region 117335
Tssr117336 12 100888073 to 100888081 8 - TSS region transcription start site region 117336
Gm36572 12 100890427 to 100899250 8823 + lncRNA gene predicted gene, 36572
Tssr114719 12 100898464 to 100898500 36 + TSS region transcription start site region 114719
Cpgi4991 12 100898877 to 100899701 824 CpG island CpG island 4991
Tssr117337 12 100899359 to 100899385 26 - TSS region transcription start site region 117337
Tssr117338 12 100899436 to 100899448 12 - TSS region transcription start site region 117338
Tssr117339 12 100899544 to 100899581 37 - TSS region transcription start site region 117339
Gm45956 12 100904107 to 100910909 6802 + lncRNA gene predicted gene, 45956
Cpgi4992 12 100907670 to 100908316 646 CpG island CpG island 4992
Tssr117340 12 100908190 to 100908220 30 - TSS region transcription start site region 117340
Ccdc88c 12 100911519 to 101028983 117464 - protein coding gene coiled-coil domain containing 88C
Tssr117341 12 100923590 to 100923595 5 - TSS region transcription start site region 117341
A630072L19Rik 12 100939129 to 100944220 5091 + antisense lncRNA gene RIKEN cDNA A630072L19 gene
Cpgi4993 12 100944867 to 100945075 208 CpG island CpG island 4993
Tssr117342 12 100978089 to 100978129 40 - TSS region transcription start site region 117342
Gm36756 12 100986623 to 101014822 28199 + antisense lncRNA gene predicted gene, 36756
Tssr114720 12 100986627 to 100986632 5 + TSS region transcription start site region 114720
Tssr114721 12 100992970 to 100992973 3 + TSS region transcription start site region 114721
Tssr114722 12 101007658 to 101007673 15 + TSS region transcription start site region 114722
Tssr117343 12 101016122 to 101016148 26 - TSS region transcription start site region 117343
Mir1190 12 101021673 to 101021768 95 - miRNA gene microRNA 1190
Cpgi4994 12 101028255 to 101029656 1401 CpG island CpG island 4994
Tssr117344 12 101028844 to 101028913 69 - TSS region transcription start site region 117344
Tssr117345 12 101029016 to 101029042 26 - TSS region transcription start site region 117345
Tssr117346 12 101029059 to 101029087 28 - TSS region transcription start site region 117346
Gm47639 12 101039092 to 101042808 3716 + antisense lncRNA gene predicted gene, 47639
Ppp4r3a 12 101039409 to 101083702 44293 - protein coding gene protein phosphatase 4 regulatory subunit 3A
Tssr117347 12 101040070 to 101040090 20 - TSS region transcription start site region 117347
Tssr117348 12 101040129 to 101040133 4 - TSS region transcription start site region 117348
Tssr117349 12 101058728 to 101058739 11 - TSS region transcription start site region 117349
Tssr117350 12 101066410 to 101066414 4 - TSS region transcription start site region 117350
Tssr117351 12 101073540 to 101073544 4 - TSS region transcription start site region 117351
Cpgi4995 12 101082435 to 101084238 1803 CpG island CpG island 4995
D130020L05Rik 12 101082451 to 101088927 6476 + antisense lncRNA gene RIKEN cDNA D130020L05 gene
Tssr114723 12 101082939 to 101082973 34 + TSS region transcription start site region 114723
Tssr117352 12 101083449 to 101083487 38 - TSS region transcription start site region 117352
Tssr117353 12 101083575 to 101083611 36 - TSS region transcription start site region 117353
Tssr117354 12 101083653 to 101083717 64 - TSS region transcription start site region 117354
Tssr114724 12 101083712 to 101083743 31 + TSS region transcription start site region 114724
Tssr114725 12 101083756 to 101083802 46 + TSS region transcription start site region 114725
Tssr114726 12 101083806 to 101083832 26 + TSS region transcription start site region 114726
Gm21056 12 101103535 to 101105550 2015 - pseudogene predicted gene, 21056
Cpgi4996 12 101105216 to 101105450 234 CpG island CpG island 4996
Tssr117355 12 101115274 to 101115289 15 - TSS region transcription start site region 117355
Tssr3921 12 101145536 to 101145552 16 + TSS region transcription start site region 3921
Kif4-ps 12 101145609 to 101149273 3664 + pseudogene kinesin family member 4, pseudogene
Tssr114727 12 101169767 to 101169810 43 + TSS region transcription start site region 114727
Gm18848 12 101205723 to 101206514 791 + pseudogene predicted gene, 18848
Gm18795 12 101218176 to 101283710 65534 + pseudogene predicted gene, 18795
Mylf-ps 12 101221997 to 101222417 420 - pseudogene myosin light chain, alkali, fast skeletal muscle, pseudogene
Tssr117356 12 101222025 to 101222060 35 - TSS region transcription start site region 117356
Tssr114728 12 101222062 to 101222082 20 + TSS region transcription start site region 114728
Tssr117357 12 101222114 to 101222129 15 - TSS region transcription start site region 117357
Gm22749 12 101223592 to 101223698 106 - snRNA gene predicted gene, 22749
D12Dcr12 12 101311365 to 101311460 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 12
Tssr3922 12 101382876 to 101382891 15 + TSS region transcription start site region 3922
Catsperb 12 101404653 to 101626009 221356 + protein coding gene cation channel sperm associated auxiliary subunit beta
Gm24542 12 101554079 to 101554188 109 + miRNA gene predicted gene, 24542
Tc2n 12 101645443 to 101718523 73080 - protein coding gene tandem C2 domains, nuclear
Gm16285 12 101646186 to 101646532 346 + pseudogene predicted gene 16285
Tssr117358 12 101646274 to 101646279 5 - TSS region transcription start site region 117358
Cpgi4997 12 101717934 to 101718973 1039 CpG island CpG island 4997
Tssr117359 12 101718407 to 101718423 16 - TSS region transcription start site region 117359
Tssr117360 12 101718513 to 101718530 17 - TSS region transcription start site region 117360
Fbln5 12 101746565 to 101819055 72490 - protein coding gene fibulin 5
Tssr117361 12 101809853 to 101809865 12 - TSS region transcription start site region 117361
Tssr117362 12 101809894 to 101809907 13 - TSS region transcription start site region 117362
Tssr117363 12 101818477 to 101818488 11 - TSS region transcription start site region 117363
Tssr117364 12 101818515 to 101818540 25 - TSS region transcription start site region 117364
Cpgi4998 12 101818703 to 101819413 710 CpG island CpG island 4998
Tssr117365 12 101818801 to 101818812 11 - TSS region transcription start site region 117365
Tssr117366 12 101818855 to 101818866 11 - TSS region transcription start site region 117366
Tssr117367 12 101818874 to 101818896 22 - TSS region transcription start site region 117367
Tssr117368 12 101818905 to 101818920 15 - TSS region transcription start site region 117368
Tssr117369 12 101818943 to 101818952 9 - TSS region transcription start site region 117369
Tssr117370 12 101818954 to 101818963 9 - TSS region transcription start site region 117370
Tssr117371 12 101818996 to 101819007 11 - TSS region transcription start site region 117371
Tssr117372 12 101819023 to 101819034 11 - TSS region transcription start site region 117372
Tssr117373 12 101819048 to 101819061 13 - TSS region transcription start site region 117373
Tssr117374 12 101819064 to 101819078 14 - TSS region transcription start site region 117374
Tssr117375 12 101819081 to 101819106 25 - TSS region transcription start site region 117375
Tssr117376 12 101819108 to 101819113 5 - TSS region transcription start site region 117376
Trip11 12 101834043 to 101913171 79128 - protein coding gene thyroid hormone receptor interactor 11
Tssr117377 12 101837520 to 101837537 17 - TSS region transcription start site region 117377
Gm20701 12 101866949 to 101867295 346 + pseudogene predicted gene 20701
Tssr117378 12 101880538 to 101880550 12 - TSS region transcription start site region 117378
Tssr117379 12 101886940 to 101886955 15 - TSS region transcription start site region 117379
Gm20702 12 101906080 to 101906539 459 + pseudogene predicted gene 20702
Cpgi4999 12 101912414 to 101913495 1081 CpG island CpG island 4999
Tssr117380 12 101913116 to 101913161 45 - TSS region transcription start site region 117380
Gm20036 12 101913240 to 101915335 2095 + unclassified non-coding RNA gene predicted gene, 20036
Atxn3 12 101918901 to 101958243 39342 - protein coding gene ataxin 3
Cpgi5000 12 101957762 to 101958468 706 CpG island CpG island 5000
Tssr117381 12 101958161 to 101958212 51 - TSS region transcription start site region 117381
Ndufb1-ps 12 101968099 to 101977063 8964 - bidirectional promoter lncRNA gene NADH:ubiquinone oxidoreductase subunit B1
Tssr117382 12 101971850 to 101971863 13 - TSS region transcription start site region 117382
Cpgi5001 12 101975339 to 101976523 1184 CpG island CpG island 5001
Tssr114729 12 101975366 to 101975371 5 + TSS region transcription start site region 114729
Tssr117383 12 101975683 to 101975746 63 - TSS region transcription start site region 117383
Tssr114730 12 101975725 to 101975751 26 + TSS region transcription start site region 114730
Cpsf2 12 101975764 to 102005993 30229 + protein coding gene cleavage and polyadenylation specific factor 2
Tssr117384 12 101975765 to 101975776 11 - TSS region transcription start site region 117384
Tssr3923 12 101975883 to 101975886 3 - TSS region transcription start site region 3923
Tssr117385 12 101975913 to 101975924 11 - TSS region transcription start site region 117385
Tssr117386 12 101975935 to 101975946 11 - TSS region transcription start site region 117386
Tssr114731 12 101975965 to 101976004 39 + TSS region transcription start site region 114731
Tssr117387 12 101975979 to 101975984 5 - TSS region transcription start site region 117387
Tssr114732 12 101976006 to 101976017 11 + TSS region transcription start site region 114732
Tssr117388 12 101976023 to 101976035 12 - TSS region transcription start site region 117388
Tssr117389 12 101976204 to 101976248 44 - TSS region transcription start site region 117389
Tssr117390 12 101976265 to 101976279 14 - TSS region transcription start site region 117390
Tssr117391 12 101976282 to 101976301 19 - TSS region transcription start site region 117391
Tssr117392 12 101976877 to 101976887 10 - TSS region transcription start site region 117392
Tssr117393 12 101976897 to 101976914 17 - TSS region transcription start site region 117393