Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:99702920-100113890

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr110707 11 99710271 to 99710275 4 - TSS region transcription start site region 110707
Gm14186 11 99718892 to 99719028 136 - pseudogene predicted gene 14186
Tssr3668 11 99730118 to 99730121 3 + TSS region transcription start site region 3668
Gm14193 11 99730175 to 99730327 152 + pseudogene predicted gene 14193
Gm14180 11 99734213 to 99734290 77 - protein coding gene predicted gene 14180
Tssr110708 11 99740121 to 99740125 4 - TSS region transcription start site region 110708
Tssr110709 11 99759225 to 99759230 5 - TSS region transcription start site region 110709
Gm14188 11 99763933 to 99764100 167 - pseudogene predicted gene 14188
Tssr110710 11 99764153 to 99764157 4 - TSS region transcription start site region 110710
Gm11595 11 99771714 to 99772913 1199 - protein coding gene predicted gene 11595
Tssr3669 11 99772914 to 99772916 2 - TSS region transcription start site region 3669
Krtap4-8 11 99780014 to 99780643 629 - protein coding gene keratin associated protein 4-8
Tssr104885 11 99785191 to 99785198 7 + TSS region transcription start site region 104885
Krtap4-9 11 99785200 to 99786257 1057 + protein coding gene keratin associated protein 4-9
Gm11596 11 99792675 to 99793292 617 - protein coding gene predicted gene 11596
Tssr110711 11 99793347 to 99793354 7 - TSS region transcription start site region 110711
Gm11569 11 99798064 to 99798932 868 - protein coding gene predicted gene 11569
Gm11554 11 99803670 to 99804446 776 - protein coding gene predicted gene 11554
Krtap4-13 11 99809078 to 99809892 814 - protein coding gene keratin associated protein 4-13
Gm11564 11 99814976 to 99815666 690 - protein coding gene predicted gene 11564
Tssr110712 11 99815661 to 99815664 3 - TSS region transcription start site region 110712
2300003K06Rik 11 99837148 to 99838066 918 - protein coding gene RIKEN cDNA 2300003K06 gene
Tssr110713 11 99838069 to 99838073 4 - TSS region transcription start site region 110713
Gm11556 11 99839973 to 99840260 287 - pseudogene predicted gene 11556
Tssr110714 11 99840345 to 99840368 23 - TSS region transcription start site region 110714
Krtap4-16 11 99850655 to 99851605 950 - protein coding gene keratin associated protein 4-16
Tssr110715 11 99851627 to 99851632 5 - TSS region transcription start site region 110715
Gm26324 11 99856308 to 99856414 106 + snRNA gene predicted gene, 26324
Tssr104886 11 99857915 to 99857918 3 + TSS region transcription start site region 104886
Gm11568 11 99857917 to 99859061 1144 + protein coding gene predicted gene 11568
Tssr110716 11 99858722 to 99858741 19 - TSS region transcription start site region 110716
Tssr110717 11 99858744 to 99858754 10 - TSS region transcription start site region 110717
Tssr110718 11 99858760 to 99858763 3 - TSS region transcription start site region 110718
Gm11559 11 99864476 to 99865571 1095 + protein coding gene predicted gene 11559
Tssr104887 11 99865094 to 99865109 15 + TSS region transcription start site region 104887
Krtap9-1 11 99873389 to 99874000 611 + protein coding gene keratin associated protein 9-1
Gm11567 11 99879187 to 99880229 1042 + protein coding gene predicted gene 11567
Gm11566 11 99897573 to 99897775 202 + pseudogene predicted gene 11566
Tssr104888 11 99907918 to 99907922 4 + TSS region transcription start site region 104888
Krtap31-1 11 99907920 to 99908890 970 + protein coding gene keratin associated protein 31-1
Tssr104889 11 99914729 to 99914733 4 + TSS region transcription start site region 104889
Gm11565 11 99914751 to 99915671 920 + protein coding gene predicted gene 11565
Tssr104890 11 99932020 to 99932029 9 + TSS region transcription start site region 104890
Cpgi3801 11 99932101 to 99932330 229 CpG island CpG island 3801
Gm11560 11 99932162 to 99933098 936 + pseudogene predicted gene 11560
Tssr104891 11 99932945 to 99932954 9 + TSS region transcription start site region 104891
Tssr104892 11 99936289 to 99936293 4 + TSS region transcription start site region 104892
Krtap31-2 11 99936291 to 99937225 934 + protein coding gene keratin associated protein 31-2
Tssr104893 11 99948420 to 99948429 9 + TSS region transcription start site region 104893
Krtap9-5 11 99948475 to 99949551 1076 + protein coding gene keratin associated protein 9-5
Gm11561 11 99955607 to 99956023 416 + pseudogene predicted gene 11561
Gm11553 11 99961079 to 99961318 239 + pseudogene predicted gene 11553
Krtap29-1 11 99978025 to 99979053 1028 - protein coding gene keratin associated protein 29-1
Tssr110719 11 99979097 to 99979103 6 - TSS region transcription start site region 110719
Krtap16-1 11 99984710 to 99986597 1887 - protein coding gene keratin associated protein 16-1
Cpgi3802 11 99985176 to 99985531 355 CpG island CpG island 3802
Tssr110720 11 99986606 to 99986608 2 - TSS region transcription start site region 110720
Gm11558 11 99988134 to 99988592 458 - pseudogene predicted gene 11558
Krtap17-1 11 99993234 to 99993994 760 - protein coding gene keratin associated protein 17-1
Cpgi3803 11 99993541 to 99993939 398 CpG island CpG island 3803
Tssr110721 11 99993992 to 99993997 5 - TSS region transcription start site region 110721
33.MMHAP16FRC12.seq 11 99999751 to 99999915 164 DNA segment DNA segment, 33.MMHAP16FRC12.seq
Krt33a 11 100011199 to 100016212 5013 - protein coding gene keratin 33A
Tssr110722 11 100016204 to 100016216 12 - TSS region transcription start site region 110722
Krt33b 11 100023634 to 100029868 6234 - protein coding gene keratin 33B
Tssr110723 11 100029883 to 100029887 4 - TSS region transcription start site region 110723
Krt34 11 100037347 to 100041554 4207 - protein coding gene keratin 34
Tssr110724 11 100041547 to 100041561 14 - TSS region transcription start site region 110724
Tssr110725 11 100046542 to 100046549 7 - TSS region transcription start site region 110725
Krt31 11 100046646 to 100050551 3905 - protein coding gene keratin 31
Tssr110726 11 100050542 to 100050557 15 - TSS region transcription start site region 110726
D11Mit123.3 11 100050659 to 100050887 228 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 123.3
D11Mit123 11 100050723 to 100051036 313 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 123
D11Dcr21 11 100050877 to 100051021 144 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 21
Tssr104894 11 100052104 to 100052115 11 + TSS region transcription start site region 104894
Tssr104895 11 100052260 to 100052265 5 + TSS region transcription start site region 104895
Tssr104896 11 100052281 to 100052292 11 + TSS region transcription start site region 104896
Gm11571 11 100052286 to 100085983 33697 + antisense lncRNA gene predicted gene 11571
Krt32 11 100080848 to 100088226 7378 - protein coding gene keratin 32
Tssr110727 11 100085443 to 100085448 5 - TSS region transcription start site region 110727
Tssr110728 11 100088265 to 100088270 5 - TSS region transcription start site region 110728
Krt35 11 100092192 to 100096224 4032 - protein coding gene keratin 35
Tssr110729 11 100096237 to 100096242 5 - TSS region transcription start site region 110729
Tssr110730 11 100096273 to 100096279 6 - TSS region transcription start site region 110730
Krt36 11 100102007 to 100105626 3619 - protein coding gene keratin 36
Tssr110731 11 100105638 to 100105645 7 - TSS region transcription start site region 110731
Gm12347 11 100105771 to 100112106 6335 - lincRNA gene predicted gene 12347
Tssr110732 11 100112012 to 100112052 40 - TSS region transcription start site region 110732
Tssr110733 11 100112154 to 100112162 8 - TSS region transcription start site region 110733