Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:89091933-90028723

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scc6 11 6930277 to 89128908 82198631 QTL colon tumor susceptibility 6
Mastr 11 45817754 to 89927907 44110153 QTL modifier of astrocytoma
Gm525 11 89073841 to 89093040 19199 + protein coding gene predicted gene 525
Tssr104088 11 89092282 to 89092293 11 + TSS region transcription start site region 104088
Tssr104089 11 89092299 to 89092316 17 + TSS region transcription start site region 104089
Tssr110066 11 89092921 to 89092926 5 - TSS region transcription start site region 110066
Tssr110067 11 89095269 to 89095284 15 - TSS region transcription start site region 110067
Gm38759 11 89121390 to 89124467 3077 + lncRNA gene predicted gene, 38759
Gm11497 11 89124456 to 89126706 2250 - lincRNA gene predicted gene 11497
Sbmd4 11 89128823 to 89128908 85 QTL spinal bone mineral density 4
D11Mit284 11 89128823 to 89128908 85 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 284
Gm24734 11 89136505 to 89136766 261 - unclassified non-coding RNA gene predicted gene, 24734
Cpgi3526 11 89298109 to 89298830 721 CpG island CpG island 3526
Cpgi3527 11 89299265 to 89299630 365 CpG island CpG island 3527
Nog 11 89300638 to 89302332 1694 - protein coding gene noggin
Cpgi3528 11 89301282 to 89303597 2315 CpG island CpG island 3528
Tssr110068 11 89302545 to 89302567 22 - TSS region transcription start site region 110068
Gm2018 11 89302723 to 89309428 6705 + lincRNA gene predicted gene 2018
Gm42088 11 89372249 to 89384963 12714 + lncRNA gene predicted gene, 42088
Ankfn1 11 89386933 to 89733723 346790 - protein coding gene ankyrin-repeat and fibronectin type III domain containing 1
Cpgi3529 11 89391928 to 89392159 231 CpG island CpG island 3529
Tssr110069 11 89403510 to 89403519 9 - TSS region transcription start site region 110069
Tssr110070 11 89403523 to 89403539 16 - TSS region transcription start site region 110070
Tssr110071 11 89696850 to 89696873 23 - TSS region transcription start site region 110071
Gm46291 11 89697060 to 89710167 13107 + lncRNA gene predicted gene, 46291
Tssr104090 11 89715355 to 89715363 8 + TSS region transcription start site region 104090
Tssr110072 11 89733652 to 89733671 19 - TSS region transcription start site region 110072
Tssr110073 11 89733680 to 89733708 28 - TSS region transcription start site region 110073
Tssr110074 11 89733726 to 89733736 10 - TSS region transcription start site region 110074
Lfibq23 11 89751423 to 90536535 785112 QTL liver fibrosis QTL 23
Tssr110075 11 89777677 to 89777697 20 - TSS region transcription start site region 110075
Tssr110076 11 89818649 to 89818660 11 - TSS region transcription start site region 110076
D11Mit179 11 89835299 to 89835463 164 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 179
Tmevd5 11 89835299 to 89835463 164 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5
Tssr110077 11 89841266 to 89841279 13 - TSS region transcription start site region 110077
Tssr3638 11 89841296 to 89841310 14 - TSS region transcription start site region 3638
Gm34677 11 89860320 to 89884746 24426 - lncRNA gene predicted gene, 34677
D11Mit327 11 89867092 to 89867197 105 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 327
D11Ertd729e 11 89924236 to 89924437 201 DNA segment DNA segment, Chr 11, ERATO Doi 729, expressed
Pstc2 11 89927789 to 89927907 118 QTL periosteal circumference 2
D11Mit285 11 89927789 to 89927907 118 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 285
Adip19 11 89927789 to 89927907 118 QTL adiposity 19
Pctp 11 89982665 to 90002894 20229 - protein coding gene phosphatidylcholine transfer protein
Gm10276 11 89999839 to 90001674 1835 unclassified gene predicted gene 10276
Cpgi3530 11 90002751 to 90003010 259 CpG island CpG island 3530
Tssr110078 11 90002846 to 90002876 30 - TSS region transcription start site region 110078
Tssr110079 11 90002881 to 90002898 17 - TSS region transcription start site region 110079