Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:88890476-89010514

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Gm23507 11 88905121 to 88905227 106 + snRNA gene predicted gene, 23507
Tssr104055 11 88905925 to 88905938 13 + TSS region transcription start site region 104055
Scpep1os 11 88905928 to 88936061 30133 + antisense lncRNA gene serine carboxypeptidase 1, opposite strand
Scpep1 11 88924020 to 88955442 31422 - protein coding gene serine carboxypeptidase 1
Tssr110047 11 88924268 to 88924276 8 - TSS region transcription start site region 110047
Tssr110048 11 88924283 to 88924293 10 - TSS region transcription start site region 110048
Tssr110049 11 88924337 to 88924348 11 - TSS region transcription start site region 110049
Tssr110050 11 88924539 to 88924559 20 - TSS region transcription start site region 110050
Tssr110051 11 88924580 to 88924597 17 - TSS region transcription start site region 110051
Tssr110052 11 88924604 to 88924615 11 - TSS region transcription start site region 110052
Tssr110053 11 88924632 to 88924643 11 - TSS region transcription start site region 110053
Tssr110054 11 88924699 to 88924710 11 - TSS region transcription start site region 110054
Tssr110055 11 88934233 to 88934237 4 - TSS region transcription start site region 110055
D11Mit370 11 88943117 to 88943263 146 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-370
Tssr104056 11 88950476 to 88950514 38 + TSS region transcription start site region 104056
Tssr104057 11 88954260 to 88954273 13 + TSS region transcription start site region 104057
Tssr110056 11 88954884 to 88954910 26 - TSS region transcription start site region 110056
Cpgi3522 11 88955193 to 88955671 478 CpG island CpG island 3522
Tssr110057 11 88955366 to 88955447 81 - TSS region transcription start site region 110057
Elobl 11 88964665 to 88966917 2252 - protein coding gene elongin B-like
Tssr110058 11 88966936 to 88966944 8 - TSS region transcription start site region 110058
Tssr104058 11 88970251 to 88970263 12 + TSS region transcription start site region 104058
Gm10367 11 88972375 to 88974160 1785 unclassified gene predicted gene 10367
2210409E12Rik 11 88972657 to 88973002 345 + pseudogene RIKEN cDNA 2210409E12 gene
Cpgi3523 11 88973746 to 88974671 925 CpG island CpG island 3523
Tssr104059 11 88973919 to 88973924 5 + TSS region transcription start site region 104059
Tssr104060 11 88973928 to 88973961 33 + TSS region transcription start site region 104060
Coil 11 88973935 to 88991613 17678 + protein coding gene coilin
Gm11496 11 88993040 to 88996544 3504 - lincRNA gene predicted gene 11496
Tssr110059 11 88994316 to 88994323 7 - TSS region transcription start site region 110059
Tssr104061 11 88994726 to 88994749 23 + TSS region transcription start site region 104061
Tssr110060 11 88995729 to 88995760 31 - TSS region transcription start site region 110060
Tssr110061 11 88996500 to 88996533 33 - TSS region transcription start site region 110061
Cpgi3524 11 88999097 to 89000096 999 CpG island CpG island 3524
Tssr104062 11 88999385 to 88999434 49 + TSS region transcription start site region 104062
Trim25 11 88999398 to 89020293 20895 + protein coding gene tripartite motif-containing 25
Tssr104063 11 88999442 to 88999479 37 + TSS region transcription start site region 104063
Tssr104064 11 89004771 to 89004783 12 + TSS region transcription start site region 104064
Tssr104065 11 89008116 to 89008129 13 + TSS region transcription start site region 104065