Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:88244729-89889098

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Scc6 11 6930277 to 89128908 82198631 QTL colon tumor susceptibility 6
Pid3 11 61795994 to 88808902 27012908 QTL prion incubation determinant 3
nmf65 11 69039071 to 89076112 20037041 heritable phenotypic marker neuroscience mutagenesis facility, 65
Cpgi3515 11 88252108 to 88252438 330 CpG island CpG island 3515
Tssr104044 11 88253353 to 88253379 26 + TSS region transcription start site region 104044
Gm38534 11 88253368 to 88256990 3622 + lincRNA gene predicted gene, 38534
Gm34366 11 88273425 to 88274584 1159 + lncRNA gene predicted gene, 34366
Tssr104045 11 88294046 to 88294073 27 + TSS region transcription start site region 104045
Ccdc182 11 88294058 to 88295261 1203 + protein coding gene coiled-coil domain containing 182
Cpgi3516 11 88294221 to 88294640 419 CpG island CpG island 3516
Gm11509 11 88335660 to 88335984 324 + pseudogene predicted gene 11509
Msi2 11 88339382 to 88718267 378885 - protein coding gene musashi RNA-binding protein 2
Tssr110004 11 88340437 to 88340459 22 - TSS region transcription start site region 110004
Tssr110005 11 88340693 to 88340706 13 - TSS region transcription start site region 110005
Tssr110006 11 88341916 to 88341918 2 - TSS region transcription start site region 110006
Tssr110007 11 88342555 to 88342572 17 - TSS region transcription start site region 110007
Tssr110008 11 88342905 to 88342915 10 - TSS region transcription start site region 110008
Tssr110009 11 88343414 to 88343418 4 - TSS region transcription start site region 110009
Tssr110010 11 88344247 to 88344260 13 - TSS region transcription start site region 110010
Cpgi3517 11 88348812 to 88348975 163 CpG island CpG island 3517
Tssr110011 11 88349196 to 88349200 4 - TSS region transcription start site region 110011
Mir378b 11 88352773 to 88352864 91 + miRNA gene microRNA 378b
Gm15893 11 88356291 to 88363947 7656 + antisense lncRNA gene predicted gene 15893
Tssr104046 11 88357166 to 88357181 15 + TSS region transcription start site region 104046
Tssr110012 11 88366948 to 88366955 7 - TSS region transcription start site region 110012
Tssr110013 11 88366972 to 88366983 11 - TSS region transcription start site region 110013
Tssr110014 11 88394668 to 88394679 11 - TSS region transcription start site region 110014
4931406E20Rik 11 88396513 to 88398419 1906 unclassified gene RIKEN cDNA 4931406E20 gene
Tssr110015 11 88428865 to 88428867 2 - TSS region transcription start site region 110015
Gm11510 11 88432986 to 88433514 528 - pseudogene predicted gene 11510
Tssr110016 11 88456722 to 88456727 5 - TSS region transcription start site region 110016
6720454L07Rik 11 88531596 to 88533502 1906 unclassified gene RIKEN cDNA 6720454L07 gene
Tssr110017 11 88540453 to 88540468 15 - TSS region transcription start site region 110017
Tssr110018 11 88541635 to 88541646 11 - TSS region transcription start site region 110018
Tssr110019 11 88551163 to 88551176 13 - TSS region transcription start site region 110019
Tssr110020 11 88552558 to 88552566 8 - TSS region transcription start site region 110020
Tssr110021 11 88552589 to 88552599 10 - TSS region transcription start site region 110021
Tssr110022 11 88611028 to 88611046 18 - TSS region transcription start site region 110022
0610039H22Rik 11 88619251 to 88623426 4175 + lncRNA gene RIKEN cDNA 0610039H22 gene
Tssr104047 11 88619701 to 88619711 10 + TSS region transcription start site region 104047
Tssr110023 11 88622805 to 88622809 4 - TSS region transcription start site region 110023
Tssr104048 11 88624926 to 88624949 23 + TSS region transcription start site region 104048
Tssr104049 11 88625003 to 88625017 14 + TSS region transcription start site region 104049
Tssr110024 11 88625629 to 88625661 32 - TSS region transcription start site region 110024
Tssr110025 11 88631555 to 88631557 2 - TSS region transcription start site region 110025
Tssr110026 11 88643548 to 88643552 4 - TSS region transcription start site region 110026
Tssr110027 11 88689914 to 88689956 42 - TSS region transcription start site region 110027
Tssr110028 11 88694933 to 88694936 3 - TSS region transcription start site region 110028
Tssr110029 11 88702291 to 88702292 1 - TSS region transcription start site region 110029
Cpgi3518 11 88717700 to 88719130 1430 CpG island CpG island 3518
Tssr110030 11 88717791 to 88717838 47 - TSS region transcription start site region 110030
Tssr110031 11 88718048 to 88718059 11 - TSS region transcription start site region 110031
Tssr110032 11 88718078 to 88718104 26 - TSS region transcription start site region 110032
Tssr110033 11 88718136 to 88718161 25 - TSS region transcription start site region 110033
Tssr110034 11 88718165 to 88718196 31 - TSS region transcription start site region 110034
Tssr110035 11 88718223 to 88718294 71 - TSS region transcription start site region 110035
Tssr110036 11 88718296 to 88718310 14 - TSS region transcription start site region 110036
Tssr104050 11 88718442 to 88718504 62 + TSS region transcription start site region 104050
C030037D09Rik 11 88718643 to 88728572 9929 + lincRNA gene RIKEN cDNA C030037D09 gene
Tssr104051 11 88728061 to 88728076 15 + TSS region transcription start site region 104051
Gm11493 11 88741011 to 88743369 2358 - lincRNA gene predicted gene 11493
Cpgi3519 11 88778015 to 88778252 237 CpG island CpG island 3519
D11Mit212 11 88808762 to 88808902 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 212
Abbp4 11 88808762 to 99190771 10382009 QTL A/J and C57BL/6 blood pressure 4
Tssr110037 11 88827272 to 88827314 42 - TSS region transcription start site region 110037
Akap1 11 88830792 to 88864586 33794 - protein coding gene A kinase (PRKA) anchor protein 1
Tssr110038 11 88841433 to 88841475 42 - TSS region transcription start site region 110038
Tssr110039 11 88841476 to 88841491 15 - TSS region transcription start site region 110039
Tssr110040 11 88844434 to 88844454 20 - TSS region transcription start site region 110040
Tssr110041 11 88851462 to 88851522 60 - TSS region transcription start site region 110041
4930556N13Rik 11 88851604 to 88881395 29791 + antisense lncRNA gene RIKEN cDNA 4930556N13 gene
Tssr104052 11 88851620 to 88851623 3 + TSS region transcription start site region 104052
Tssr104053 11 88851641 to 88851652 11 + TSS region transcription start site region 104053
Cpgi3520 11 88863245 to 88865045 1800 CpG island CpG island 3520
Tssr110042 11 88863801 to 88863810 9 - TSS region transcription start site region 110042
Tssr110043 11 88863821 to 88863834 13 - TSS region transcription start site region 110043
Tssr110044 11 88864509 to 88864527 18 - TSS region transcription start site region 110044
Tssr110045 11 88864534 to 88864591 57 - TSS region transcription start site region 110045
Tssr104054 11 88864771 to 88864807 36 + TSS region transcription start site region 104054
Tssr110046 11 88877088 to 88877091 3 - TSS region transcription start site region 110046
Cpgi3521 11 88878245 to 88878487 242 CpG island CpG island 3521
Gm23507 11 88905121 to 88905227 106 + snRNA gene predicted gene, 23507
Tssr104055 11 88905925 to 88905938 13 + TSS region transcription start site region 104055
Scpep1os 11 88905928 to 88936061 30133 + antisense lncRNA gene serine carboxypeptidase 1, opposite strand
Scpep1 11 88924020 to 88955442 31422 - protein coding gene serine carboxypeptidase 1
Tssr110047 11 88924268 to 88924276 8 - TSS region transcription start site region 110047
Tssr110048 11 88924283 to 88924293 10 - TSS region transcription start site region 110048
Tssr110049 11 88924337 to 88924348 11 - TSS region transcription start site region 110049
Tssr110050 11 88924539 to 88924559 20 - TSS region transcription start site region 110050
Tssr110051 11 88924580 to 88924597 17 - TSS region transcription start site region 110051
Tssr110052 11 88924604 to 88924615 11 - TSS region transcription start site region 110052
Tssr110053 11 88924632 to 88924643 11 - TSS region transcription start site region 110053
Tssr110054 11 88924699 to 88924710 11 - TSS region transcription start site region 110054
Tssr110055 11 88934233 to 88934237 4 - TSS region transcription start site region 110055
D11Mit370 11 88943117 to 88943263 146 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-370
Tssr104056 11 88950476 to 88950514 38 + TSS region transcription start site region 104056
Tssr104057 11 88954260 to 88954273 13 + TSS region transcription start site region 104057
Tssr110056 11 88954884 to 88954910 26 - TSS region transcription start site region 110056
Cpgi3522 11 88955193 to 88955671 478 CpG island CpG island 3522
Tssr110057 11 88955366 to 88955447 81 - TSS region transcription start site region 110057
Elobl 11 88964665 to 88966917 2252 - protein coding gene elongin B-like
Tssr110058 11 88966936 to 88966944 8 - TSS region transcription start site region 110058
Tssr104058 11 88970251 to 88970263 12 + TSS region transcription start site region 104058
Gm10367 11 88972375 to 88974160 1785 unclassified gene predicted gene 10367
2210409E12Rik 11 88972657 to 88973002 345 + pseudogene RIKEN cDNA 2210409E12 gene
Cpgi3523 11 88973746 to 88974671 925 CpG island CpG island 3523
Tssr104059 11 88973919 to 88973924 5 + TSS region transcription start site region 104059
Tssr104060 11 88973928 to 88973961 33 + TSS region transcription start site region 104060
Coil 11 88973935 to 88991613 17678 + protein coding gene coilin
Gm11496 11 88993040 to 88996544 3504 - lincRNA gene predicted gene 11496
Tssr110059 11 88994316 to 88994323 7 - TSS region transcription start site region 110059
Tssr104061 11 88994726 to 88994749 23 + TSS region transcription start site region 104061
Tssr110060 11 88995729 to 88995760 31 - TSS region transcription start site region 110060
Tssr110061 11 88996500 to 88996533 33 - TSS region transcription start site region 110061
Cpgi3524 11 88999097 to 89000096 999 CpG island CpG island 3524
Tssr104062 11 88999385 to 88999434 49 + TSS region transcription start site region 104062
Trim25 11 88999398 to 89020293 20895 + protein coding gene tripartite motif-containing 25
Tssr104063 11 88999442 to 88999479 37 + TSS region transcription start site region 104063
Tssr104064 11 89004771 to 89004783 12 + TSS region transcription start site region 104064
Tssr104065 11 89008116 to 89008129 13 + TSS region transcription start site region 104065
Tssr104066 11 89010893 to 89010909 16 + TSS region transcription start site region 104066
Tssr104067 11 89010969 to 89010977 8 + TSS region transcription start site region 104067
Tssr104068 11 89015528 to 89015556 28 + TSS region transcription start site region 104068
Tssr104069 11 89016877 to 89016893 16 + TSS region transcription start site region 104069
Tssr104070 11 89016933 to 89016948 15 + TSS region transcription start site region 104070
Tssr104071 11 89019479 to 89019501 22 + TSS region transcription start site region 104071
Tssr104072 11 89019608 to 89019620 12 + TSS region transcription start site region 104072
Tssr104073 11 89024511 to 89024525 14 + TSS region transcription start site region 104073
Tssr104074 11 89029392 to 89029431 39 + TSS region transcription start site region 104074
Dgke 11 89035185 to 89060757 25572 - protein coding gene diacylglycerol kinase, epsilon
Tssr110062 11 89048398 to 89048404 6 - TSS region transcription start site region 110062
Cpgi3525 11 89059909 to 89061001 1092 CpG island CpG island 3525
Tssr110063 11 89060528 to 89060588 60 - TSS region transcription start site region 110063
Tssr104075 11 89060625 to 89060639 14 + TSS region transcription start site region 104075
Tssr104076 11 89060667 to 89060672 5 + TSS region transcription start site region 104076
Tssr110064 11 89060697 to 89060799 102 - TSS region transcription start site region 110064
Tssr104077 11 89060732 to 89060754 22 + TSS region transcription start site region 104077
Dgkeos 11 89064729 to 89069098 4369 + antisense lncRNA gene diacylglycerol kinase, epsilon, opposite strand
Tssr104078 11 89065814 to 89065826 12 + TSS region transcription start site region 104078
Tssr104079 11 89065827 to 89065847 20 + TSS region transcription start site region 104079
Tssr104080 11 89065874 to 89065886 12 + TSS region transcription start site region 104080
Tssr104081 11 89066004 to 89066021 17 + TSS region transcription start site region 104081
Tssr104082 11 89066031 to 89066043 12 + TSS region transcription start site region 104082
Tssr104083 11 89066315 to 89066355 40 + TSS region transcription start site region 104083
Tssr104084 11 89066361 to 89066406 45 + TSS region transcription start site region 104084
Tssr104085 11 89066412 to 89066428 16 + TSS region transcription start site region 104085
Tssr104086 11 89066433 to 89066451 18 + TSS region transcription start site region 104086
Gm525 11 89073841 to 89093040 19199 + protein coding gene predicted gene 525
Tssr104087 11 89073921 to 89073934 13 + TSS region transcription start site region 104087
D11Mit41 11 89075978 to 89076112 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 41
Tssr110065 11 89077695 to 89077702 7 - TSS region transcription start site region 110065
Tssr3637 11 89078207 to 89078211 4 + TSS region transcription start site region 3637
Gm22534 11 89087048 to 89087151 103 - snRNA gene predicted gene, 22534
Tssr104088 11 89092282 to 89092293 11 + TSS region transcription start site region 104088
Tssr104089 11 89092299 to 89092316 17 + TSS region transcription start site region 104089
Tssr110066 11 89092921 to 89092926 5 - TSS region transcription start site region 110066
Tssr110067 11 89095269 to 89095284 15 - TSS region transcription start site region 110067
Gm38759 11 89121390 to 89124467 3077 + lncRNA gene predicted gene, 38759
Gm11497 11 89124456 to 89126706 2250 - lincRNA gene predicted gene 11497
D11Mit284 11 89128823 to 89128908 85 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 284
Sbmd4 11 89128823 to 89128908 85 QTL spinal bone mineral density 4
Gm24734 11 89136505 to 89136766 261 - unclassified non-coding RNA gene predicted gene, 24734
Cpgi3526 11 89298109 to 89298830 721 CpG island CpG island 3526
Cpgi3527 11 89299265 to 89299630 365 CpG island CpG island 3527
Nog 11 89300638 to 89302332 1694 - protein coding gene noggin
Cpgi3528 11 89301282 to 89303597 2315 CpG island CpG island 3528
Tssr110068 11 89302545 to 89302567 22 - TSS region transcription start site region 110068
Gm2018 11 89302723 to 89309428 6705 + lincRNA gene predicted gene 2018
Gm42088 11 89372249 to 89384963 12714 + lncRNA gene predicted gene, 42088
Ankfn1 11 89386933 to 89733723 346790 - protein coding gene ankyrin-repeat and fibronectin type III domain containing 1
Cpgi3529 11 89391928 to 89392159 231 CpG island CpG island 3529
Tssr110069 11 89403510 to 89403519 9 - TSS region transcription start site region 110069
Tssr110070 11 89403523 to 89403539 16 - TSS region transcription start site region 110070
Tssr110071 11 89696850 to 89696873 23 - TSS region transcription start site region 110071
Gm46291 11 89697060 to 89710167 13107 + lncRNA gene predicted gene, 46291
Tssr104090 11 89715355 to 89715363 8 + TSS region transcription start site region 104090
Tssr110072 11 89733652 to 89733671 19 - TSS region transcription start site region 110072
Tssr110073 11 89733680 to 89733708 28 - TSS region transcription start site region 110073
Tssr110074 11 89733726 to 89733736 10 - TSS region transcription start site region 110074
Lfibq23 11 89751423 to 90536535 785112 QTL liver fibrosis QTL 23
Tssr110075 11 89777677 to 89777697 20 - TSS region transcription start site region 110075
Tssr110076 11 89818649 to 89818660 11 - TSS region transcription start site region 110076
Tmevd5 11 89835299 to 89835463 164 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5
D11Mit179 11 89835299 to 89835463 164 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 179
Tssr110077 11 89841266 to 89841279 13 - TSS region transcription start site region 110077
Tssr3638 11 89841296 to 89841310 14 - TSS region transcription start site region 3638
Gm34677 11 89860320 to 89884746 24426 - lncRNA gene predicted gene, 34677
D11Mit327 11 89867092 to 89867197 105 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 327