Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:86733004-87493089

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cltc 11 86694610 to 86757742 63132 - protein coding gene clathrin, heavy polypeptide (Hc)
Tssr109911 11 86738917 to 86738966 49 - TSS region transcription start site region 109911
Tssr109912 11 86741141 to 86741165 24 - TSS region transcription start site region 109912
Tssr109913 11 86741719 to 86741720 1 - TSS region transcription start site region 109913
Tssr109914 11 86750462 to 86750475 13 - TSS region transcription start site region 109914
Tssr109915 11 86752515 to 86752525 10 - TSS region transcription start site region 109915
Cpgi3477 11 86756846 to 86758311 1465 CpG island CpG island 3477
Tssr109916 11 86756996 to 86757018 22 - TSS region transcription start site region 109916
Tssr109917 11 86757301 to 86757314 13 - TSS region transcription start site region 109917
Tssr109918 11 86757337 to 86757344 7 - TSS region transcription start site region 109918
Tssr109919 11 86757425 to 86757436 11 - TSS region transcription start site region 109919
Tssr109920 11 86757452 to 86757463 11 - TSS region transcription start site region 109920
Tssr109921 11 86757483 to 86757572 89 - TSS region transcription start site region 109921
Gm42085 11 86757794 to 86775647 17853 + lncRNA gene predicted gene, 42085
Tssr3625 11 86757836 to 86757876 40 + TSS region transcription start site region 3625
Tssr103897 11 86757879 to 86757911 32 + TSS region transcription start site region 103897
Tssr103898 11 86757917 to 86757928 11 + TSS region transcription start site region 103898
Tssr3626 11 86758164 to 86758189 25 + TSS region transcription start site region 3626
Tssr103899 11 86758228 to 86758232 4 + TSS region transcription start site region 103899
Dhx40 11 86768846 to 86807746 38900 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 40
Tssr109922 11 86805271 to 86805275 4 - TSS region transcription start site region 109922
Cpgi3478 11 86807119 to 86807966 847 CpG island CpG island 3478
Tssr109923 11 86807541 to 86807553 12 - TSS region transcription start site region 109923
Tssr109924 11 86807565 to 86807622 57 - TSS region transcription start site region 109924
Tssr109925 11 86807624 to 86807645 21 - TSS region transcription start site region 109925
Tssr3627 11 86807658 to 86807661 3 - TSS region transcription start site region 3627
Gm33742 11 86818625 to 86867595 48970 - lncRNA gene predicted gene, 33742
Tssr109926 11 86828460 to 86828471 11 - TSS region transcription start site region 109926
Tssr109927 11 86838722 to 86838726 4 - TSS region transcription start site region 109927
Gm38942 11 86858951 to 86867792 8841 + lncRNA gene predicted gene, 38942
Tssr109928 11 86860079 to 86860107 28 - TSS region transcription start site region 109928
Tssr103900 11 86860441 to 86860470 29 + TSS region transcription start site region 103900
Tssr109929 11 86867645 to 86867660 15 - TSS region transcription start site region 109929
Tssr103901 11 86872874 to 86872885 11 + TSS region transcription start site region 103901
Tssr109930 11 86875975 to 86875978 3 - TSS region transcription start site region 109930
Gm46290 11 86886628 to 86890125 3497 + protein coding gene predicted gene, 46290
Cpgi3479 11 86894059 to 86894409 350 CpG island CpG island 3479
Tssr103902 11 86900246 to 86900250 4 + TSS region transcription start site region 103902
D11Mit282 11 86905214 to 86905339 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 282
Ypel2 11 86936425 to 86993707 57282 - protein coding gene yippee like 2
4930406D14Rik 11 86950163 to 86952456 2293 unclassified gene RIKEN cDNA 4930406D14 gene
Cpgi3480 11 86992759 to 86994040 1281 CpG island CpG island 3480
Tssr109931 11 86993634 to 86993644 10 - TSS region transcription start site region 109931
Tssr109932 11 86993652 to 86993674 22 - TSS region transcription start site region 109932
Tssr109933 11 86993682 to 86993705 23 - TSS region transcription start site region 109933
Tssr109934 11 86993715 to 86993771 56 - TSS region transcription start site region 109934
Tssr109935 11 86993801 to 86993820 19 - TSS region transcription start site region 109935
Gm22387 11 86997133 to 86997263 130 - snoRNA gene predicted gene, 22387
Tssr103903 11 87015984 to 87015989 5 + TSS region transcription start site region 103903
Tssr109936 11 87025404 to 87025425 21 - TSS region transcription start site region 109936
Tssr103904 11 87025653 to 87025667 14 + TSS region transcription start site region 103904
Tssr109937 11 87026642 to 87026671 29 - TSS region transcription start site region 109937
Gdpd1 11 87033867 to 87074062 40195 - protein coding gene glycerophosphodiester phosphodiesterase domain containing 1
Tssr109938 11 87034408 to 87034411 3 - TSS region transcription start site region 109938
Tssr109939 11 87045845 to 87045860 15 - TSS region transcription start site region 109939
Tssr109940 11 87045911 to 87045931 20 - TSS region transcription start site region 109940
D11Dcr15 11 87060819 to 87060957 138 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 15
D11Mit325 11 87060826 to 87060949 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 325
Cpgi3481 11 87073356 to 87074464 1108 CpG island CpG island 3481
Tssr109941 11 87074055 to 87074071 16 - TSS region transcription start site region 109941
Tssr109942 11 87074073 to 87074116 43 - TSS region transcription start site region 109942
Tssr109943 11 87074120 to 87074131 11 - TSS region transcription start site region 109943
Gm11479 11 87074257 to 87074958 701 - lincRNA gene predicted gene 11479
Smg8 11 87077732 to 87086774 9042 - protein coding gene smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gm9378 11 87078787 to 87079257 470 + pseudogene predicted gene 9378
Cpgi3482 11 87086232 to 87086959 727 CpG island CpG island 3482
Tssr109944 11 87086732 to 87086743 11 - TSS region transcription start site region 109944
Tssr109945 11 87086752 to 87086781 29 - TSS region transcription start site region 109945
Prr11 11 87089153 to 87108708 19555 - protein coding gene proline rich 11
Tssr109946 11 87108656 to 87108719 63 - TSS region transcription start site region 109946
Cpgi3483 11 87108715 to 87110202 1487 CpG island CpG island 3483
Tssr109947 11 87108736 to 87108759 23 - TSS region transcription start site region 109947
Tssr109948 11 87108766 to 87108783 17 - TSS region transcription start site region 109948
Tssr103905 11 87109181 to 87109195 14 + TSS region transcription start site region 103905
Tssr103906 11 87109221 to 87109239 18 + TSS region transcription start site region 103906
Tssr103907 11 87109252 to 87109274 22 + TSS region transcription start site region 103907
Ska2 11 87109261 to 87122974 13713 + protein coding gene spindle and kinetochore associated complex subunit 2
Tssr103908 11 87109560 to 87109583 23 + TSS region transcription start site region 103908
Mir301 11 87113004 to 87113089 85 + miRNA gene microRNA 301
Tssr103909 11 87113078 to 87113080 2 + TSS region transcription start site region 103909
Gm11491 11 87121567 to 87126958 5391 - antisense lncRNA gene predicted gene 11491
Tssr103910 11 87121580 to 87121583 3 + TSS region transcription start site region 103910
Tssr109949 11 87122063 to 87122064 1 - TSS region transcription start site region 109949
Cpgi3484 11 87126719 to 87127888 1169 CpG island CpG island 3484
Tssr103911 11 87127042 to 87127051 9 + TSS region transcription start site region 103911
Tssr103912 11 87127052 to 87127105 53 + TSS region transcription start site region 103912
Trim37 11 87127077 to 87220683 93606 + protein coding gene tripartite motif-containing 37
Tssr103913 11 87127108 to 87127133 25 + TSS region transcription start site region 103913
Tssr103914 11 87127164 to 87127171 7 + TSS region transcription start site region 103914
Tssr103915 11 87127172 to 87127264 92 + TSS region transcription start site region 103915
Tssr103916 11 87127267 to 87127279 12 + TSS region transcription start site region 103916
Tssr109950 11 87212425 to 87212438 13 - TSS region transcription start site region 109950
Tssr103917 11 87216460 to 87216481 21 + TSS region transcription start site region 103917
Tssr103918 11 87216484 to 87216499 15 + TSS region transcription start site region 103918
Tssr103919 11 87216951 to 87216958 7 + TSS region transcription start site region 103919
Tssr109951 11 87217714 to 87217758 44 - TSS region transcription start site region 109951
Ppm1e 11 87226906 to 87358994 132088 - protein coding gene protein phosphatase 1E (PP2C domain containing)
Tssr109952 11 87281196 to 87281200 4 - TSS region transcription start site region 109952
Tssr109953 11 87293912 to 87293937 25 - TSS region transcription start site region 109953
Tssr109954 11 87294047 to 87294061 14 - TSS region transcription start site region 109954
Gm11490 11 87304673 to 87304944 271 + pseudogene predicted gene 11490
Gm22883 11 87318694 to 87318799 105 - snRNA gene predicted gene, 22883
Tssr109955 11 87320400 to 87320404 4 - TSS region transcription start site region 109955
Tssr109956 11 87325061 to 87325073 12 - TSS region transcription start site region 109956
Tssr103920 11 87331612 to 87331631 19 + TSS region transcription start site region 103920
Tssr103921 11 87331640 to 87331647 7 + TSS region transcription start site region 103921
5830426K05Rik 11 87340723 to 87343849 3126 unclassified gene RIKEN cDNA 5830426K05 gene
Tssr109957 11 87342873 to 87342881 8 - TSS region transcription start site region 109957
Gm33937 11 87357523 to 87361744 4221 + lncRNA gene predicted gene, 33937
Cpgi3485 11 87358030 to 87359344 1314 CpG island CpG island 3485
Tssr109958 11 87358907 to 87358944 37 - TSS region transcription start site region 109958
Tssr109959 11 87359011 to 87359081 70 - TSS region transcription start site region 109959
Tssr109960 11 87359086 to 87359093 7 - TSS region transcription start site region 109960
Rad51c 11 87377607 to 87404954 27347 - protein coding gene RAD51 paralog C
Cpgi3486 11 87404087 to 87405303 1216 CpG island CpG island 3486
Tssr109961 11 87404380 to 87404424 44 - TSS region transcription start site region 109961
Tssr109962 11 87404466 to 87404509 43 - TSS region transcription start site region 109962
Tssr103922 11 87405036 to 87405045 9 + TSS region transcription start site region 103922
Tssr103923 11 87405049 to 87405113 64 + TSS region transcription start site region 103923
Tex14 11 87405065 to 87555823 150758 + protein coding gene testis expressed gene 14
Tssr109963 11 87421982 to 87421993 11 - TSS region transcription start site region 109963
Rnu1a1 11 87422867 to 87423030 163 + snRNA gene U1a1 small nuclear RNA
Gm22068 11 87426716 to 87426879 163 + snRNA gene predicted gene, 22068
Tssr103924 11 87433218 to 87433260 42 + TSS region transcription start site region 103924
Cpgi3487 11 87442706 to 87442906 200 CpG island CpG island 3487
Rnu3b1 11 87443237 to 87443451 214 + snRNA gene U3B small nuclear RNA 1
Gm23137 11 87444474 to 87444580 106 - snRNA gene predicted gene, 23137
Tssr103925 11 87447887 to 87447891 4 + TSS region transcription start site region 103925
Cpgi3488 11 87448104 to 87448287 183 CpG island CpG island 3488
Rnu3b3 11 87448627 to 87448841 214 + snRNA gene U3B small nuclear RNA 3
D11Mit56 11 87461242 to 87461424 182 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 56
Cpgi3489 11 87461712 to 87462004 292 CpG island CpG island 3489
Rnu3b4 11 87462286 to 87462503 217 + snRNA gene U3B small nuclear RNA 4
Gm11489 11 87467679 to 87469058 1379 + pseudogene predicted gene 11489
Cpgi3490 11 87470822 to 87471074 252 CpG island CpG island 3490
Rnu3b2 11 87471368 to 87471582 214 + snRNA gene U3B small nuclear RNA 2
Tssr103926 11 87471592 to 87471603 11 + TSS region transcription start site region 103926
Tssr103927 11 87471666 to 87471674 8 + TSS region transcription start site region 103927