Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:85086837-86578629

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Skts-fp2 11 58828440 to 85175703 26347263 QTL skin tumor susceptibility in FVB and PWK 2
Usp32 11 84984437 to 85140042 155605 - protein coding gene ubiquitin specific peptidase 32
Tssr109802 11 85094122 to 85094126 4 - TSS region transcription start site region 109802
Gm11439 11 85095141 to 85095549 408 - pseudogene predicted gene 11439
Tssr103817 11 85111077 to 85111089 12 + TSS region transcription start site region 103817
Gm18157 11 85111088 to 85111829 741 + pseudogene predicted gene, 18157
Rpl13-ps1 11 85111126 to 85111793 667 - pseudogene ribosomal protein L13, pseudogene 1
Cpgi3450 11 85139359 to 85140611 1252 CpG island CpG island 3450
Tssr109803 11 85139899 to 85139922 23 - TSS region transcription start site region 109803
Tssr109804 11 85139939 to 85139971 32 - TSS region transcription start site region 109804
D11Mit159 11 85154238 to 85154359 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 159
Gm23506 11 85163077 to 85163183 106 + snRNA gene predicted gene, 23506
Cpgi3451 11 85170104 to 85170382 278 CpG island CpG island 3451
1700125H20Rik 11 85170404 to 85181145 10741 + protein coding gene RIKEN cDNA 1700125H20 gene
Tssr3620 11 85171068 to 85171073 5 + TSS region transcription start site region 3620
Tssr103818 11 85171074 to 85171086 12 + TSS region transcription start site region 103818
Tssr103819 11 85171097 to 85171104 7 + TSS region transcription start site region 103819
D11Mit178 11 85175558 to 85175703 145 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 178
Tssr3621 11 85177998 to 85178011 13 + TSS region transcription start site region 3621
Tssr103820 11 85178034 to 85178041 7 + TSS region transcription start site region 103820
Cpgi3452 11 85182952 to 85183418 466 CpG island CpG island 3452
Appbp2 11 85191308 to 85235120 43812 - protein coding gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2
Tssr103821 11 85194333 to 85194352 19 + TSS region transcription start site region 103821
Tssr103822 11 85194357 to 85194370 13 + TSS region transcription start site region 103822
Gm38935 11 85204331 to 85231641 27310 + lncRNA gene predicted gene, 38935
Akirin1-ps 11 85216597 to 85217054 457 + pseudogene akirin 1, pseudogene
Cpgi3453 11 85234337 to 85235684 1347 CpG island CpG island 3453
Tssr109805 11 85234807 to 85234840 33 - TSS region transcription start site region 109805
Tssr109806 11 85234867 to 85234914 47 - TSS region transcription start site region 109806
Tssr109807 11 85235065 to 85235137 72 - TSS region transcription start site region 109807
Appbp2os 11 85235166 to 85238304 3138 + antisense lncRNA gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand
Gm22587 11 85297452 to 85297749 297 - unclassified non-coding RNA gene predicted gene, 22587
Cpgi3454 11 85310590 to 85312235 1645 CpG island CpG island 3454
Tssr109808 11 85311072 to 85311103 31 - TSS region transcription start site region 109808
Tssr103823 11 85311190 to 85311210 20 + TSS region transcription start site region 103823
Tssr103824 11 85311232 to 85311286 54 + TSS region transcription start site region 103824
Ppm1d 11 85311254 to 85347071 35817 + protein coding gene protein phosphatase 1D magnesium-dependent, delta isoform
Tssr103825 11 85311289 to 85311325 36 + TSS region transcription start site region 103825
Tssr103826 11 85311346 to 85311395 49 + TSS region transcription start site region 103826
Tssr103827 11 85311401 to 85311412 11 + TSS region transcription start site region 103827
Tssr109809 11 85312053 to 85312097 44 - TSS region transcription start site region 109809
Tssr103828 11 85312138 to 85312149 11 + TSS region transcription start site region 103828
Tssr103829 11 85312172 to 85312180 8 + TSS region transcription start site region 103829
Tssr103830 11 85339668 to 85339677 9 + TSS region transcription start site region 103830
Tssr103831 11 85339699 to 85339759 60 + TSS region transcription start site region 103831
Tssr103832 11 85341127 to 85341133 6 + TSS region transcription start site region 103832
Cpgi3455 11 85352600 to 85353452 852 CpG island CpG island 3455
Tssr109810 11 85352625 to 85352640 15 - TSS region transcription start site region 109810
Tssr103833 11 85352775 to 85352797 22 + TSS region transcription start site region 103833
Tssr103834 11 85353156 to 85353219 63 + TSS region transcription start site region 103834
Bcas3 11 85353167 to 85826058 472891 + protein coding gene breast carcinoma amplified sequence 3
Tssr103835 11 85492720 to 85492732 12 + TSS region transcription start site region 103835
Tssr103836 11 85492737 to 85492751 14 + TSS region transcription start site region 103836
Gm23765 11 85493759 to 85493905 146 + snRNA gene predicted gene, 23765
Tssr109811 11 85524944 to 85524951 7 - TSS region transcription start site region 109811
Tssr109812 11 85546641 to 85546642 1 - TSS region transcription start site region 109812
Tssr103837 11 85549592 to 85549595 3 + TSS region transcription start site region 103837
D11Mit324 11 85583427 to 85583528 101 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 324
D11Mit220 11 85583428 to 85583540 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 220
D11Mit324.2 11 85583506 to 85583678 172 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 324.2
7030407E18Rik 11 85598479 to 85602216 3737 unclassified gene RIKEN cDNA 7030407E18 gene
Tssr103838 11 85614820 to 85614824 4 + TSS region transcription start site region 103838
Tssr103839 11 85683852 to 85683867 15 + TSS region transcription start site region 103839
Tssr103840 11 85688323 to 85688326 3 + TSS region transcription start site region 103840
Bcas3os1 11 85702200 to 85719744 17544 - antisense lncRNA gene breast carcinoma amplified sequence 3, opposite strand 1
Tssr103841 11 85713763 to 85713803 40 + TSS region transcription start site region 103841
Tssr109813 11 85719737 to 85719750 13 - TSS region transcription start site region 109813
Tssr103842 11 85739881 to 85739892 11 + TSS region transcription start site region 103842
Tssr103843 11 85739906 to 85739917 11 + TSS region transcription start site region 103843
Tssr103844 11 85739931 to 85739947 16 + TSS region transcription start site region 103844
Tssr103845 11 85739948 to 85739965 17 + TSS region transcription start site region 103845
Mir5110 11 85760616 to 85760702 86 - miRNA gene microRNA 5110
Bcas3os2 11 85766833 to 85775680 8847 - antisense lncRNA gene breast carcinoma amplified sequence 3 opposite strand 2
Tssr109814 11 85769127 to 85769138 11 - TSS region transcription start site region 109814
Tssr109815 11 85775655 to 85775688 33 - TSS region transcription start site region 109815
Gm23473 11 85778812 to 85778927 115 + rRNA gene predicted gene, 23473
2610027K06Rik 11 85791661 to 85832223 40562 - lncRNA gene RIKEN cDNA 2610027K06 gene
Tssr109816 11 85804197 to 85804218 21 - TSS region transcription start site region 109816
Tssr103846 11 85821843 to 85821852 9 + TSS region transcription start site region 103846
Tssr103847 11 85821857 to 85821865 8 + TSS region transcription start site region 103847
Tssr103848 11 85821878 to 85821893 15 + TSS region transcription start site region 103848
Tssr103849 11 85821909 to 85821949 40 + TSS region transcription start site region 103849
Tssr103850 11 85821951 to 85821958 7 + TSS region transcription start site region 103850
Tssr103851 11 85821961 to 85821968 7 + TSS region transcription start site region 103851
Cpgi3456 11 85829240 to 85830473 1233 CpG island CpG island 3456
Tssr103852 11 85830949 to 85830961 12 + TSS region transcription start site region 103852
Cpgi3457 11 85831008 to 85831367 359 CpG island CpG island 3457
Tssr103853 11 85831226 to 85831266 40 + TSS region transcription start site region 103853
Tssr103854 11 85831756 to 85831775 19 + TSS region transcription start site region 103854
Tssr103855 11 85831791 to 85831805 14 + TSS region transcription start site region 103855
Cpgi3458 11 85831837 to 85833629 1792 CpG island CpG island 3458
Tssr109817 11 85832294 to 85832310 16 - TSS region transcription start site region 109817
Tbx2 11 85832615 to 85841948 9333 + protein coding gene T-box 2
Tssr103856 11 85832761 to 85832776 15 + TSS region transcription start site region 103856
Tssr103857 11 85832801 to 85832827 26 + TSS region transcription start site region 103857
Tssr103858 11 85832839 to 85832850 11 + TSS region transcription start site region 103858
Tssr103859 11 85832925 to 85832949 24 + TSS region transcription start site region 103859
Tssr103860 11 85832967 to 85832986 19 + TSS region transcription start site region 103860
Cpgi3459 11 85834594 to 85834829 235 CpG island CpG island 3459
Cpgi3460 11 85836879 to 85838672 1793 CpG island CpG island 3460
Cpgi3461 11 85840345 to 85841169 824 CpG island CpG island 3461
Cpgi3462 11 85841766 to 85842341 575 CpG island CpG island 3462
Cpgi3463 11 85842971 to 85844850 1879 CpG island CpG island 3463
Gm11444 11 85846790 to 85850333 3543 - protein coding gene predicted gene 11444
Cpgi3464 11 85849001 to 85849316 315 CpG island CpG island 3464
Tssr103861 11 85886060 to 85886073 13 + TSS region transcription start site region 103861
Cpgi3465 11 85886298 to 85886753 455 CpG island CpG island 3465
Tssr103862 11 85886360 to 85886418 58 + TSS region transcription start site region 103862
Tbx4 11 85886422 to 85916097 29675 + protein coding gene T-box 4
Cpgi3466 11 85888362 to 85888821 459 CpG island CpG island 3466
Tssr103863 11 85889833 to 85889848 15 + TSS region transcription start site region 103863
Cpgi3467 11 85889845 to 85891079 1234 CpG island CpG island 3467
Tssr103864 11 85889981 to 85890006 25 + TSS region transcription start site region 103864
Cpgi3468 11 85894792 to 85895474 682 CpG island CpG island 3468
Cpgi3469 11 85926446 to 85926649 203 CpG island CpG island 3469
Tssr109818 11 85929839 to 85929850 11 - TSS region transcription start site region 109818
Gm11443 11 85950495 to 85950973 478 + pseudogene predicted gene 11443
Cpgi3470 11 85976686 to 85976920 234 CpG island CpG island 3470
D11Mit165 11 85983302 to 85983443 141 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 165
Gm20759 11 86002658 to 86024350 21692 - lncRNA gene predicted gene, 20759
Brip1 11 86058138 to 86201193 143055 - protein coding gene BRCA1 interacting protein C-terminal helicase 1
Tssr109819 11 86087897 to 86087903 6 - TSS region transcription start site region 109819
Tssr109820 11 86173099 to 86173102 3 - TSS region transcription start site region 109820
Atp5l-ps2 11 86185329 to 86185642 313 + pseudogene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 2
Cpgi3471 11 86200821 to 86201882 1061 CpG island CpG island 3471
Tssr109821 11 86201144 to 86201200 56 - TSS region transcription start site region 109821
Tssr103865 11 86201332 to 86201399 67 + TSS region transcription start site region 103865
Brip1os 11 86201370 to 86304443 103073 + antisense lncRNA gene BRCA1 interacting protein C-terminal helicase 1, opposite strand
Tssr103866 11 86201425 to 86201444 19 + TSS region transcription start site region 103866
Tssr109822 11 86201587 to 86201610 23 - TSS region transcription start site region 109822
Tssr109823 11 86201612 to 86201623 11 - TSS region transcription start site region 109823
Ints2 11 86210681 to 86257575 46894 - protein coding gene integrator complex subunit 2
Tssr103867 11 86212104 to 86212108 4 + TSS region transcription start site region 103867
Tssr109824 11 86232147 to 86232179 32 - TSS region transcription start site region 109824
Cpgi3472 11 86257086 to 86257781 695 CpG island CpG island 3472
Tssr109825 11 86257417 to 86257419 2 - TSS region transcription start site region 109825
Tssr109826 11 86257532 to 86257547 15 - TSS region transcription start site region 109826
Tssr109827 11 86257553 to 86257572 19 - TSS region transcription start site region 109827
Tssr109828 11 86257579 to 86257590 11 - TSS region transcription start site region 109828
n-TQttg2 11 86262168 to 86262239 71 + tRNA gene nuclear encoded tRNA glutamine 2 (anticodon TTG)
Med13 11 86267033 to 86357602 90569 - protein coding gene mediator complex subunit 13
Tssr109829 11 86268131 to 86268149 18 - TSS region transcription start site region 109829
Tssr109830 11 86268548 to 86268565 17 - TSS region transcription start site region 109830
Tssr109831 11 86286475 to 86286482 7 - TSS region transcription start site region 109831
Tssr109832 11 86301154 to 86301173 19 - TSS region transcription start site region 109832
Tssr109833 11 86304694 to 86304700 6 - TSS region transcription start site region 109833
Tssr109834 11 86304725 to 86304739 14 - TSS region transcription start site region 109834
Tssr109835 11 86306438 to 86306443 5 - TSS region transcription start site region 109835
Tssr109836 11 86328517 to 86328526 9 - TSS region transcription start site region 109836
Gm25427 11 86333206 to 86333308 102 + unclassified non-coding RNA gene predicted gene, 25427
Tssr109837 11 86349047 to 86349048 1 - TSS region transcription start site region 109837
Tssr109838 11 86352117 to 86352118 1 - TSS region transcription start site region 109838
Tssr109839 11 86356129 to 86356132 3 - TSS region transcription start site region 109839
Cpgi3473 11 86357202 to 86358545 1343 CpG island CpG island 3473
Tssr109840 11 86357346 to 86357385 39 - TSS region transcription start site region 109840
Tssr109841 11 86357570 to 86357614 44 - TSS region transcription start site region 109841
Tssr109842 11 86357910 to 86357922 12 - TSS region transcription start site region 109842
Tssr109843 11 86358167 to 86358172 5 - TSS region transcription start site region 109843
Tssr109844 11 86358183 to 86358194 11 - TSS region transcription start site region 109844
Tssr109845 11 86358218 to 86358227 9 - TSS region transcription start site region 109845
Tssr109846 11 86358236 to 86358259 23 - TSS region transcription start site region 109846
Tssr109847 11 86358284 to 86358322 38 - TSS region transcription start site region 109847
Gm38937 11 86360012 to 86384099 24087 - lncRNA gene predicted gene, 38937
Gm33528 11 86384243 to 86387227 2984 + lncRNA gene predicted gene, 33528
Gm18286 11 86404706 to 86405222 516 - pseudogene predicted gene, 18286
Gm23667 11 86408826 to 86408945 119 + rRNA gene predicted gene, 23667
Gm26439 11 86437310 to 86437415 105 - snRNA gene predicted gene, 26439
D11Mit211 11 86449377 to 86449514 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 211
Cpgi3474 11 86484042 to 86485299 1257 CpG island CpG island 3474
Tssr109848 11 86484312 to 86484350 38 - TSS region transcription start site region 109848
Tssr103868 11 86484624 to 86484643 19 + TSS region transcription start site region 103868
Tssr103869 11 86484647 to 86484716 69 + TSS region transcription start site region 103869
Rnft1 11 86484657 to 86499007 14350 + protein coding gene ring finger protein, transmembrane 1
Tssr103870 11 86484719 to 86484731 12 + TSS region transcription start site region 103870
Tssr103871 11 86484739 to 86484750 11 + TSS region transcription start site region 103871
Tssr109849 11 86485252 to 86485260 8 - TSS region transcription start site region 109849
Rps6kb1 11 86499009 to 86544807 45798 - protein coding gene ribosomal protein S6 kinase, polypeptide 1
Cpgi3475 11 86544055 to 86545118 1063 CpG island CpG island 3475
Tssr109850 11 86544754 to 86544781 27 - TSS region transcription start site region 109850
Tssr103872 11 86544944 to 86544978 34 + TSS region transcription start site region 103872
Tssr103873 11 86544982 to 86544999 17 + TSS region transcription start site region 103873
Tubd1 11 86544991 to 86567360 22369 + protein coding gene tubulin, delta 1
Tssr103874 11 86545011 to 86545050 39 + TSS region transcription start site region 103874
Tssr103875 11 86545068 to 86545080 12 + TSS region transcription start site region 103875
Tssr103876 11 86545173 to 86545193 20 + TSS region transcription start site region 103876
D11Wsu48e 11 86572467 to 86572722 255 DNA segment DNA segment, Chr 11, Wayne State University 48, expressed
Tssr109851 11 86577284 to 86577290 6 - TSS region transcription start site region 109851
Tssr103877 11 86577434 to 86577460 26 + TSS region transcription start site region 103877
Tssr103878 11 86577523 to 86577537 14 + TSS region transcription start site region 103878
Gm9975 11 86578495 to 86580768 2273 unclassified non-coding RNA gene predicted gene 9975