Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:84874122-85314126

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq10 11 36000000 to 85000000 49000000 QTL body mass index QTL 10
Skts-fp2 11 58828440 to 85175703 26347263 QTL skin tumor susceptibility in FVB and PWK 2
Pigw 11 84876315 to 84880285 3970 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class W
Cpgi3446 11 84879650 to 84880924 1274 CpG island CpG island 3446
Tssr103809 11 84879880 to 84879922 42 + TSS region transcription start site region 103809
Myo19 11 84880192 to 84911131 30939 + protein coding gene myosin XIX
Tssr109796 11 84880249 to 84880299 50 - TSS region transcription start site region 109796
Tssr103810 11 84880308 to 84880373 65 + TSS region transcription start site region 103810
Tssr103811 11 84880376 to 84880391 15 + TSS region transcription start site region 103811
Gm23564 11 84893087 to 84893153 66 + miRNA gene predicted gene, 23564
Tssr103812 11 84901129 to 84901146 17 + TSS region transcription start site region 103812
Znhit3 11 84910950 to 84916356 5406 - protein coding gene zinc finger, HIT type 3
Cpgi3447 11 84915985 to 84916485 500 CpG island CpG island 3447
Tssr109797 11 84916234 to 84916260 26 - TSS region transcription start site region 109797
Tssr109798 11 84916338 to 84916371 33 - TSS region transcription start site region 109798
D11Mit221 11 84929345 to 84929451 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 221
Gm33028 11 84940261 to 84943855 3594 + lncRNA gene predicted gene, 33028
Gm32917 11 84943891 to 84951103 7212 - lncRNA gene predicted gene, 32917
Cpgi3448 11 84943960 to 84944153 193 CpG island CpG island 3448
Tssr109799 11 84944789 to 84944800 11 - TSS region transcription start site region 109799
Tssr103813 11 84944914 to 84944921 7 + TSS region transcription start site region 103813
Cpgi3449 11 84957521 to 84958385 864 CpG island CpG island 3449
Tssr103814 11 84957775 to 84957799 24 + TSS region transcription start site region 103814
Car4 11 84957786 to 84966044 8258 + protein coding gene carbonic anhydrase 4
Tssr103815 11 84957802 to 84957813 11 + TSS region transcription start site region 103815
Tssr103816 11 84957817 to 84957835 18 + TSS region transcription start site region 103816
D11Mit121 11 84970026 to 84970145 119 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 121
Usp32 11 84984437 to 85140042 155605 - protein coding gene ubiquitin specific peptidase 32
Tssr109800 11 85038348 to 85038351 3 - TSS region transcription start site region 109800
Gm9365 11 85069600 to 85073884 4284 + pseudogene predicted gene 9365
Gm11440 11 85072469 to 85072995 526 - pseudogene predicted gene 11440
Tssr109801 11 85083478 to 85083484 6 - TSS region transcription start site region 109801
Tssr109802 11 85094122 to 85094126 4 - TSS region transcription start site region 109802
Gm11439 11 85095141 to 85095549 408 - pseudogene predicted gene 11439
Tssr103817 11 85111077 to 85111089 12 + TSS region transcription start site region 103817
Gm18157 11 85111088 to 85111829 741 + pseudogene predicted gene, 18157
Rpl13-ps1 11 85111126 to 85111793 667 - pseudogene ribosomal protein L13, pseudogene 1
Cpgi3450 11 85139359 to 85140611 1252 CpG island CpG island 3450
Tssr109803 11 85139899 to 85139922 23 - TSS region transcription start site region 109803
Tssr109804 11 85139939 to 85139971 32 - TSS region transcription start site region 109804
D11Mit159 11 85154238 to 85154359 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 159
Gm23506 11 85163077 to 85163183 106 + snRNA gene predicted gene, 23506
Cpgi3451 11 85170104 to 85170382 278 CpG island CpG island 3451
1700125H20Rik 11 85170404 to 85181145 10741 + protein coding gene RIKEN cDNA 1700125H20 gene
Tssr3620 11 85171068 to 85171073 5 + TSS region transcription start site region 3620
Tssr103818 11 85171074 to 85171086 12 + TSS region transcription start site region 103818
Tssr103819 11 85171097 to 85171104 7 + TSS region transcription start site region 103819
D11Mit178 11 85175558 to 85175703 145 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 178
Tssr3621 11 85177998 to 85178011 13 + TSS region transcription start site region 3621
Tssr103820 11 85178034 to 85178041 7 + TSS region transcription start site region 103820
Cpgi3452 11 85182952 to 85183418 466 CpG island CpG island 3452
Appbp2 11 85191308 to 85235120 43812 - protein coding gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2
Tssr103821 11 85194333 to 85194352 19 + TSS region transcription start site region 103821
Tssr103822 11 85194357 to 85194370 13 + TSS region transcription start site region 103822
Gm38935 11 85204331 to 85231641 27310 + lncRNA gene predicted gene, 38935
Akirin1-ps 11 85216597 to 85217054 457 + pseudogene akirin 1, pseudogene
Cpgi3453 11 85234337 to 85235684 1347 CpG island CpG island 3453
Tssr109805 11 85234807 to 85234840 33 - TSS region transcription start site region 109805
Tssr109806 11 85234867 to 85234914 47 - TSS region transcription start site region 109806
Tssr109807 11 85235065 to 85235137 72 - TSS region transcription start site region 109807
Appbp2os 11 85235166 to 85238304 3138 + antisense lncRNA gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand
Gm22587 11 85297452 to 85297749 297 - unclassified non-coding RNA gene predicted gene, 22587
Cpgi3454 11 85310590 to 85312235 1645 CpG island CpG island 3454
Tssr109808 11 85311072 to 85311103 31 - TSS region transcription start site region 109808
Tssr103823 11 85311190 to 85311210 20 + TSS region transcription start site region 103823
Tssr103824 11 85311232 to 85311286 54 + TSS region transcription start site region 103824
Ppm1d 11 85311254 to 85347071 35817 + protein coding gene protein phosphatase 1D magnesium-dependent, delta isoform
Tssr103825 11 85311289 to 85311325 36 + TSS region transcription start site region 103825
Tssr103826 11 85311346 to 85311395 49 + TSS region transcription start site region 103826
Tssr103827 11 85311401 to 85311412 11 + TSS region transcription start site region 103827
Tssr109809 11 85312053 to 85312097 44 - TSS region transcription start site region 109809
Tssr103828 11 85312138 to 85312149 11 + TSS region transcription start site region 103828
Tssr103829 11 85312172 to 85312180 8 + TSS region transcription start site region 103829