Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:83658689-83848722

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
Tssr103733 11 83662534 to 83662544 10 + TSS region transcription start site region 103733
Tssr103734 11 83662556 to 83662559 3 + TSS region transcription start site region 103734
Tssr103735 11 83662579 to 83662594 15 + TSS region transcription start site region 103735
Ccl4 11 83662584 to 83664683 2099 + protein coding gene chemokine (C-C motif) ligand 4
Tssr103736 11 83663445 to 83663473 28 + TSS region transcription start site region 103736
Tssr103737 11 83663474 to 83663477 3 + TSS region transcription start site region 103737
Tssr103738 11 83663480 to 83663500 20 + TSS region transcription start site region 103738
Tssr103739 11 83663571 to 83663579 8 + TSS region transcription start site region 103739
Tssr103740 11 83664305 to 83664339 34 + TSS region transcription start site region 103740
Tssr103741 11 83664388 to 83664483 95 + TSS region transcription start site region 103741
Tssr103742 11 83664485 to 83664513 28 + TSS region transcription start site region 103742
Tssr103743 11 83664565 to 83664577 12 + TSS region transcription start site region 103743
Tssr103744 11 83664599 to 83664612 13 + TSS region transcription start site region 103744
Tssr103745 11 83677507 to 83677511 4 + TSS region transcription start site region 103745
Gm11433 11 83677518 to 83678345 827 + pseudogene predicted gene 11433
Atp5k-ps3 11 83681538 to 83681671 133 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 3
Gm11438 11 83681538 to 83681726 188 - pseudogene predicted gene 11438
D11Bhm145 11 83685093 to 83685177 84 DNA segment DNA segment, Chr 11, Boehm 145
Gm11432 11 83687610 to 83688456 846 + pseudogene predicted gene 11432
Tssr103746 11 83695264 to 83695268 4 + TSS region transcription start site region 103746
Gm11430 11 83695275 to 83696185 910 + pseudogene predicted gene 11430
Gm11429 11 83701291 to 83701434 143 + pseudogene predicted gene 11429
Tssr103747 11 83704053 to 83704090 37 + TSS region transcription start site region 103747
Wfdc17 11 83704056 to 83706269 2213 + protein coding gene WAP four-disulfide core domain 17
D11Mit119 11 83707624 to 83707776 152 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 119
Wfdc18 11 83709015 to 83711348 2333 + protein coding gene WAP four-disulfide core domain 18
Tssr103748 11 83709093 to 83709096 3 + TSS region transcription start site region 103748
Tssr103749 11 83709101 to 83709116 15 + TSS region transcription start site region 103749
Tssr103750 11 83711224 to 83711232 8 + TSS region transcription start site region 103750
Tssr103751 11 83711236 to 83711246 10 + TSS region transcription start site region 103751
Tssr103752 11 83731343 to 83731348 5 + TSS region transcription start site region 103752
Tssr109732 11 83737307 to 83737319 12 - TSS region transcription start site region 109732
Tssr103753 11 83740645 to 83740659 14 + TSS region transcription start site region 103753
Tssr103754 11 83740674 to 83740677 3 + TSS region transcription start site region 103754
Tssr103755 11 83740706 to 83740741 35 + TSS region transcription start site region 103755
Tssr103756 11 83740747 to 83740764 17 + TSS region transcription start site region 103756
Tssr3614 11 83743823 to 83743845 22 + TSS region transcription start site region 3614
1700018H16Rik 11 83744430 to 83744866 436 unclassified gene RIKEN cDNA 1700018H16 gene
Tssr103757 11 83746366 to 83746386 20 + TSS region transcription start site region 103757
Wfdc21 11 83746940 to 83752642 5702 + protein coding gene WAP four-disulfide core domain 21
Tssr103758 11 83746989 to 83747006 17 + TSS region transcription start site region 103758
Tssr103759 11 83748276 to 83748318 42 + TSS region transcription start site region 103759
Cpgi3419 11 83753449 to 83754317 868 CpG island CpG island 3419
Tssr109733 11 83753633 to 83753653 20 - TSS region transcription start site region 109733
Tssr103760 11 83753689 to 83753722 33 + TSS region transcription start site region 103760
Heatr6 11 83753696 to 83783754 30058 + protein coding gene HEAT repeat containing 6
Gm22311 11 83764638 to 83764747 109 - rRNA gene predicted gene, 22311
Tssr103761 11 83771975 to 83771979 4 + TSS region transcription start site region 103761
Tssr3615 11 83789532 to 83789565 33 + TSS region transcription start site region 3615
Gm11434 11 83800464 to 83801089 625 + pseudogene predicted gene 11434
Gm38934 11 83804271 to 83811040 6769 - lncRNA gene predicted gene, 38934
Gm12576 11 83817682 to 83849493 31811 - lincRNA gene predicted gene 12576
13.MMHAP35FLE1.seq 11 83831547 to 83831723 176 DNA segment DNA segment, 13.MMHAP35FLE1.seq
Tssr109734 11 83832094 to 83832095 1 - TSS region transcription start site region 109734
Lgth6 11 83842594 to 83842826 232 QTL body length 6
Prdt3 11 83842594 to 83842826 232 QTL prion disease incubation time 3
Pcir2 11 83842594 to 83842826 232 QTL periosteal circumference 2
Tbbmd5 11 83842594 to 83842826 232 QTL total body bone mineral density 5
Femwf6 11 83842594 to 83842826 232 QTL femur work to failure 6
D11Mit36 11 83842594 to 83842826 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 36
Si5lq6 11 83842594 to 83842826 232 QTL serum IGFBP-5 level QTL 6
Gm23211 11 83844665 to 83844972 307 + unclassified non-coding RNA gene predicted gene, 23211