Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:82947576-83057593

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slfn5os 11 82942341 to 82960681 18340 - antisense lncRNA gene schlafen 5, opposite strand
Tssr103590 11 82951346 to 82951360 14 + TSS region transcription start site region 103590
Slfn5 11 82951349 to 82964840 13491 + protein coding gene schlafen 5
Tssr103591 11 82951366 to 82951393 27 + TSS region transcription start site region 103591
Tssr103592 11 82951406 to 82951448 42 + TSS region transcription start site region 103592
Cpgi3406 11 82952050 to 82952216 166 CpG island CpG island 3406
Tssr103593 11 82952062 to 82952094 32 + TSS region transcription start site region 103593
Tssr103594 11 82952095 to 82952125 30 + TSS region transcription start site region 103594
Tssr103595 11 82954556 to 82954575 19 + TSS region transcription start site region 103595
Tssr103596 11 82956593 to 82956604 11 + TSS region transcription start site region 103596
Tssr103597 11 82956894 to 82956905 11 + TSS region transcription start site region 103597
Tssr103598 11 82956945 to 82956959 14 + TSS region transcription start site region 103598
Tssr109597 11 82960648 to 82960671 23 - TSS region transcription start site region 109597
Tssr109598 11 82960673 to 82960683 10 - TSS region transcription start site region 109598
Tssr109599 11 82960693 to 82960698 5 - TSS region transcription start site region 109599
Tssr103599 11 82960895 to 82960906 11 + TSS region transcription start site region 103599
Tssr103600 11 82961260 to 82961272 12 + TSS region transcription start site region 103600
Tssr103601 11 82961517 to 82961544 27 + TSS region transcription start site region 103601
Tssr103602 11 82961700 to 82961743 43 + TSS region transcription start site region 103602
Tssr103603 11 82961835 to 82961849 14 + TSS region transcription start site region 103603
Tssr103604 11 82962112 to 82962129 17 + TSS region transcription start site region 103604
Tssr103605 11 82962320 to 82962338 18 + TSS region transcription start site region 103605
Tssr103606 11 82962641 to 82962684 43 + TSS region transcription start site region 103606
Tssr103607 11 82962773 to 82962785 12 + TSS region transcription start site region 103607
Tssr103608 11 82962869 to 82962880 11 + TSS region transcription start site region 103608
Tssr3605 11 82962984 to 82962985 1 + TSS region transcription start site region 3605
Tssr103609 11 82962991 to 82962992 1 + TSS region transcription start site region 103609
Tssr103610 11 82963070 to 82963085 15 + TSS region transcription start site region 103610
Tssr103611 11 82963270 to 82963294 24 + TSS region transcription start site region 103611
Tssr103612 11 82963306 to 82963315 9 + TSS region transcription start site region 103612
Tssr103613 11 82963446 to 82963458 12 + TSS region transcription start site region 103613
Tssr103614 11 82963567 to 82963578 11 + TSS region transcription start site region 103614
Tssr103615 11 82964086 to 82964095 9 + TSS region transcription start site region 103615
Tssr103616 11 82964519 to 82964528 9 + TSS region transcription start site region 103616
Tssr103617 11 82964560 to 82964580 20 + TSS region transcription start site region 103617
Tssr103618 11 82964588 to 82964598 10 + TSS region transcription start site region 103618
Cpgi3407 11 82970899 to 82971179 280 CpG island CpG island 3407
Gm11424 11 82971092 to 82971920 828 + pseudogene predicted gene 11424
1190001M18Rik 11 82974316 to 82975585 1269 - lincRNA gene RIKEN cDNA 1190001M18 gene
Slfn9 11 82978390 to 82991830 13440 - protein coding gene schlafen 9
Tssr109600 11 82979975 to 82979979 4 - TSS region transcription start site region 109600
D11Pas78 11 82982751 to 82983307 556 DNA segment DNA segment, Chr 11, Pasteur Institute 78
Mir7679 11 82985003 to 82985065 62 - miRNA gene microRNA 7679
Tssr109601 11 82991105 to 82991171 66 - TSS region transcription start site region 109601
Tssr109602 11 82991740 to 82991782 42 - TSS region transcription start site region 109602
Tssr109603 11 82991787 to 82991838 51 - TSS region transcription start site region 109603
Slfn8 11 83002158 to 83020810 18652 - protein coding gene schlafen 8
Tssr109604 11 83002220 to 83002236 16 - TSS region transcription start site region 109604
Tssr109605 11 83002553 to 83002564 11 - TSS region transcription start site region 109605
Tssr109606 11 83002576 to 83002593 17 - TSS region transcription start site region 109606
Tssr109607 11 83002642 to 83002686 44 - TSS region transcription start site region 109607
Tssr109608 11 83003056 to 83003076 20 - TSS region transcription start site region 109608
Tssr109609 11 83003096 to 83003109 13 - TSS region transcription start site region 109609
Tssr109610 11 83003528 to 83003548 20 - TSS region transcription start site region 109610
Tssr109611 11 83003626 to 83003639 13 - TSS region transcription start site region 109611
Tssr109612 11 83003659 to 83003676 17 - TSS region transcription start site region 109612
Tssr109613 11 83003726 to 83003737 11 - TSS region transcription start site region 109613
Tssr109614 11 83003749 to 83003760 11 - TSS region transcription start site region 109614
Tssr109615 11 83004389 to 83004402 13 - TSS region transcription start site region 109615
Tssr109616 11 83005148 to 83005173 25 - TSS region transcription start site region 109616
Tssr109617 11 83012135 to 83012147 12 - TSS region transcription start site region 109617
Tssr109618 11 83012211 to 83012289 78 - TSS region transcription start site region 109618
Tssr109619 11 83012415 to 83012426 11 - TSS region transcription start site region 109619
Tssr109620 11 83012448 to 83012465 17 - TSS region transcription start site region 109620
Tssr109621 11 83012467 to 83012479 12 - TSS region transcription start site region 109621
Tssr109622 11 83012921 to 83012930 9 - TSS region transcription start site region 109622
D11Pas14 11 83019922 to 83020603 681 DNA segment DNA segment, Chr 11, Pasteur Institute 14
Tssr109623 11 83020086 to 83020113 27 - TSS region transcription start site region 109623
Tssr109624 11 83020115 to 83020146 31 - TSS region transcription start site region 109624
Tssr109625 11 83020219 to 83020231 12 - TSS region transcription start site region 109625
Tssr109626 11 83020251 to 83020280 29 - TSS region transcription start site region 109626
Tssr109627 11 83020350 to 83020361 11 - TSS region transcription start site region 109627
Tssr109628 11 83020727 to 83020738 11 - TSS region transcription start site region 109628
Tssr109629 11 83020756 to 83020767 11 - TSS region transcription start site region 109629
Tssr109630 11 83020770 to 83020783 13 - TSS region transcription start site region 109630
Tssr109631 11 83020788 to 83020843 55 - TSS region transcription start site region 109631
Gm11425 11 83027500 to 83027997 497 - pseudogene predicted gene 11425
Slfn10-ps 11 83028130 to 83040042 11912 - pseudogene schlafen 10, pseudogene
Gm27598 11 83032632 to 83032694 62 - miRNA gene predicted gene, 27598
Gm48434 11 83036377 to 83036908 531 + pseudogene predicted gene, 48434
Tssr103619 11 83039859 to 83039874 15 + TSS region transcription start site region 103619
Tssr109632 11 83040193 to 83040219 26 - TSS region transcription start site region 109632
Tssr109633 11 83040416 to 83040432 16 - TSS region transcription start site region 109633
Tssr109634 11 83040471 to 83040480 9 - TSS region transcription start site region 109634
Tssr109635 11 83040483 to 83040518 35 - TSS region transcription start site region 109635
Tssr103620 11 83040607 to 83040612 5 + TSS region transcription start site region 103620
Tssr103621 11 83041256 to 83041288 32 + TSS region transcription start site region 103621
Tssr109636 11 83045003 to 83045029 26 - TSS region transcription start site region 109636
Tssr109637 11 83045627 to 83045645 18 - TSS region transcription start site region 109637