Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4888754-4998064

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nipsnap1 11 4873959 to 4894201 20242 + protein coding gene nipsnap homolog 1
Tssr100142 11 4891205 to 4891210 5 + TSS region transcription start site region 100142
Mir6918 11 4891345 to 4891402 57 + miRNA gene microRNA 6918
Cpgi2522 11 4895008 to 4895893 885 CpG island CpG island 2522
Tssr100143 11 4895316 to 4895327 11 + TSS region transcription start site region 100143
Thoc5 11 4895320 to 4928867 33547 + protein coding gene THO complex 5
Tssr100144 11 4895328 to 4895354 26 + TSS region transcription start site region 100144
Tssr100145 11 4902242 to 4902247 5 + TSS region transcription start site region 100145
Tssr100146 11 4902279 to 4902291 12 + TSS region transcription start site region 100146
AA413626 11 4918516 to 4918918 402 + pseudogene expressed sequence AA413626
Gm35321 11 4934377 to 4943237 8860 + lncRNA gene predicted gene, 35321
Nefh 11 4938754 to 4948064 9310 - protein coding gene neurofilament, heavy polypeptide
Tssr106583 11 4939535 to 4939546 11 - TSS region transcription start site region 106583
Tssr106584 11 4939621 to 4939632 11 - TSS region transcription start site region 106584
Tssr106585 11 4939680 to 4939694 14 - TSS region transcription start site region 106585
Tssr106586 11 4939709 to 4939724 15 - TSS region transcription start site region 106586
Tssr106587 11 4939809 to 4939818 9 - TSS region transcription start site region 106587
Tssr106588 11 4939933 to 4939941 8 - TSS region transcription start site region 106588
Tssr106589 11 4940041 to 4940050 9 - TSS region transcription start site region 106589
Tssr100147 11 4941150 to 4941166 16 + TSS region transcription start site region 100147
Tssr100148 11 4941272 to 4941285 13 + TSS region transcription start site region 100148
Tssr106590 11 4941394 to 4941405 11 - TSS region transcription start site region 106590
Tssr106591 11 4943923 to 4943934 11 - TSS region transcription start site region 106591
Gm39571 11 4943939 to 4944527 588 + lncRNA gene predicted gene, 39571
Cpgi2523 11 4946656 to 4948492 1836 CpG island CpG island 2523
Tssr106592 11 4947105 to 4947134 29 - TSS region transcription start site region 106592
Tssr100149 11 4947356 to 4947391 35 + TSS region transcription start site region 100149
Tssr100150 11 4947473 to 4947511 38 + TSS region transcription start site region 100150
Tssr106593 11 4947991 to 4948009 18 - TSS region transcription start site region 106593
Cpgi2524 11 4949275 to 4949567 292 CpG island CpG island 2524
Tssr106594 11 4984795 to 4984802 7 - TSS region transcription start site region 106594
Cpgi2525 11 4986721 to 4987660 939 CpG island CpG island 2525
Tssr106595 11 4986735 to 4986747 12 - TSS region transcription start site region 106595
Ap1b1 11 4986824 to 5042791 55967 + protein coding gene adaptor protein complex AP-1, beta 1 subunit
Tssr100151 11 4986883 to 4986894 11 + TSS region transcription start site region 100151
Tssr100152 11 4986898 to 4986949 51 + TSS region transcription start site region 100152
Tssr100153 11 4986950 to 4986964 14 + TSS region transcription start site region 100153
Tssr106596 11 4992566 to 4992597 31 - TSS region transcription start site region 106596