Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:117954855-118278279

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4226 11 117963233 to 117963934 701 CpG island CpG island 4226
Tssr106099 11 117963652 to 117963686 34 + TSS region transcription start site region 106099
Socs3 11 117966079 to 117970047 3968 - protein coding gene suppressor of cytokine signaling 3
Tssr112054 11 117967277 to 117967290 13 - TSS region transcription start site region 112054
Cpgi4227 11 117967411 to 117970132 2721 CpG island CpG island 4227
Tssr112055 11 117967959 to 117967967 8 - TSS region transcription start site region 112055
Tssr112056 11 117968057 to 117968072 15 - TSS region transcription start site region 112056
Tssr112057 11 117968183 to 117968224 41 - TSS region transcription start site region 112057
Tssr112058 11 117968621 to 117968645 24 - TSS region transcription start site region 112058
Tssr112059 11 117968711 to 117968745 34 - TSS region transcription start site region 112059
Tssr112060 11 117969176 to 117969192 16 - TSS region transcription start site region 112060
Tssr112061 11 117969284 to 117969297 13 - TSS region transcription start site region 112061
Tssr112062 11 117969384 to 117969416 32 - TSS region transcription start site region 112062
Tssr112063 11 117969905 to 117969938 33 - TSS region transcription start site region 112063
Tssr112064 11 117970343 to 117970354 11 - TSS region transcription start site region 112064
Tssr106100 11 117976217 to 117976228 11 + TSS region transcription start site region 106100
Tssr106101 11 117976287 to 117976301 14 + TSS region transcription start site region 106101
Tssr106102 11 117976303 to 117976318 15 + TSS region transcription start site region 106102
Tssr106103 11 117976320 to 117976360 40 + TSS region transcription start site region 106103
Tssr106104 11 117977997 to 117978010 13 + TSS region transcription start site region 106104
Tssr106105 11 117978092 to 117978101 9 + TSS region transcription start site region 106105
Tssr106106 11 117978102 to 117978176 74 + TSS region transcription start site region 106106
Cpgi4228 11 117986178 to 117987515 1337 CpG island CpG island 4228
Pgs1 11 117986297 to 118024011 37714 + protein coding gene phosphatidylglycerophosphate synthase 1
Tssr106107 11 117986838 to 117986899 61 + TSS region transcription start site region 106107
Tssr106108 11 117986900 to 117986916 16 + TSS region transcription start site region 106108
Tssr112065 11 117987185 to 117987196 11 - TSS region transcription start site region 112065
Tssr112066 11 117987213 to 117987232 19 - TSS region transcription start site region 112066
Tssr106109 11 117987289 to 117987311 22 + TSS region transcription start site region 106109
Tssr106110 11 117987416 to 117987429 13 + TSS region transcription start site region 106110
Tssr106111 11 117987433 to 117987459 26 + TSS region transcription start site region 106111
Tssr106112 11 117987468 to 117987479 11 + TSS region transcription start site region 106112
Tssr112067 11 117988099 to 117988131 32 - TSS region transcription start site region 112067
Tssr112068 11 117989859 to 117989868 9 - TSS region transcription start site region 112068
Tssr112069 11 117991825 to 117991837 12 - TSS region transcription start site region 112069
Tssr3744 11 117991850 to 117991859 9 - TSS region transcription start site region 3744
Tssr112070 11 117991865 to 117991876 11 - TSS region transcription start site region 112070
Mir6933 11 118002270 to 118002350 80 + miRNA gene microRNA 6933
Tssr106113 11 118003518 to 118003522 4 + TSS region transcription start site region 106113
Tssr106114 11 118004643 to 118004648 5 + TSS region transcription start site region 106114
Tssr106115 11 118014544 to 118014577 33 + TSS region transcription start site region 106115
Tssr106116 11 118014591 to 118014594 3 + TSS region transcription start site region 106116
Dnah17 11 118021723 to 118130634 108911 - protein coding gene dynein, axonemal, heavy chain 17
Tssr3745 11 118100372 to 118100373 1 - TSS region transcription start site region 3745
Gm11738 11 118114855 to 118118279 3424 + antisense lncRNA gene predicted gene 11738
Tssr112071 11 118130645 to 118130678 33 - TSS region transcription start site region 112071
Tssr112072 11 118130688 to 118130704 16 - TSS region transcription start site region 112072
D11Mit48.1 11 118131665 to 118131789 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 48.1
D11Mit48 11 118131764 to 118131898 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 48
Vispl 11 118131764 to 118131898 134 QTL visual placing
Lvrq7 11 118131898 to 12318637 -105813261 QTL liver weight QTL 7
Dbm2 11 118131898 to 94546357 -23585541 QTL diabetes modifier 2
Pregq2 11 118131898 to 94172953 -23958945 QTL pregnancy QTL 2
Gm38514 11 118132022 to 118137775 5753 - lncRNA gene predicted gene, 38514
D11Mit49 11 118142292 to 118142447 155 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 49
D11Mit49.1 11 118142386 to 118142504 118 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 49.1
Tssr112073 11 118143877 to 118143880 3 - TSS region transcription start site region 112073
Tssr112074 11 118145778 to 118145803 25 - TSS region transcription start site region 112074
Tssr112075 11 118145811 to 118145828 17 - TSS region transcription start site region 112075
Tssr3746 11 118145987 to 118146009 22 + TSS region transcription start site region 3746
Tssr106117 11 118146026 to 118146037 11 + TSS region transcription start site region 106117
Tssr106118 11 118146048 to 118146063 15 + TSS region transcription start site region 106118
Tssr106119 11 118146073 to 118146091 18 + TSS region transcription start site region 106119
Tssr3747 11 118146693 to 118146737 44 + TSS region transcription start site region 3747
Tssr112076 11 118148011 to 118148026 15 - TSS region transcription start site region 112076
Tssr106120 11 118153209 to 118153239 30 + TSS region transcription start site region 106120
Cyth1 11 118164166 to 118248592 84426 - protein coding gene cytohesin 1
Gm24060 11 118180941 to 118181035 94 - snRNA gene predicted gene, 24060
Cpgi4229 11 118202326 to 118202858 532 CpG island CpG island 4229
Tssr112077 11 118202480 to 118202503 23 - TSS region transcription start site region 112077
Tssr112078 11 118202528 to 118202571 43 - TSS region transcription start site region 112078
Tssr112079 11 118202615 to 118202629 14 - TSS region transcription start site region 112079
Tssr112080 11 118202704 to 118202750 46 - TSS region transcription start site region 112080
Tssr112081 11 118202753 to 118202772 19 - TSS region transcription start site region 112081
Gm11737 11 118204712 to 118205179 467 - pseudogene predicted gene 11737
Tssr112082 11 118206443 to 118206448 5 - TSS region transcription start site region 112082
Tssr106121 11 118209932 to 118209938 6 + TSS region transcription start site region 106121
Tssr112083 11 118210106 to 118210110 4 - TSS region transcription start site region 112083
Tssr112084 11 118211849 to 118211870 21 - TSS region transcription start site region 112084
Tssr106122 11 118211977 to 118211984 7 + TSS region transcription start site region 106122
Tssr3748 11 118212047 to 118212052 5 - TSS region transcription start site region 3748
Tssr106123 11 118212246 to 118212260 14 + TSS region transcription start site region 106123
Tssr112085 11 118212702 to 118212711 9 - TSS region transcription start site region 112085
Tssr112086 11 118212715 to 118212748 33 - TSS region transcription start site region 112086
Tssr112087 11 118212759 to 118212775 16 - TSS region transcription start site region 112087
Tssr112088 11 118212832 to 118212841 9 - TSS region transcription start site region 112088
Tssr112089 11 118212849 to 118212852 3 - TSS region transcription start site region 112089
Tssr112090 11 118219033 to 118219047 14 - TSS region transcription start site region 112090
Tssr112091 11 118219054 to 118219062 8 - TSS region transcription start site region 112091
Tssr112092 11 118222754 to 118222792 38 - TSS region transcription start site region 112092
Tssr106124 11 118244230 to 118244244 14 + TSS region transcription start site region 106124
Tssr106125 11 118245341 to 118245349 8 + TSS region transcription start site region 106125
Cpgi4230 11 118247533 to 118249280 1747 CpG island CpG island 4230
Tssr112093 11 118248489 to 118248504 15 - TSS region transcription start site region 112093
Tssr112094 11 118248507 to 118248571 64 - TSS region transcription start site region 112094
Tssr3749 11 118248586 to 118248587 1 - TSS region transcription start site region 3749
Tssr112095 11 118248590 to 118248607 17 - TSS region transcription start site region 112095
Usp36 11 118259651 to 118290244 30593 - protein coding gene ubiquitin specific peptidase 36
Tssr112096 11 118268044 to 118268050 6 - TSS region transcription start site region 112096