Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:116959951-117259962

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mgat5b 11 116918863 to 116986948 68085 + protein coding gene mannoside acetylglucosaminyltransferase 5, isoenzyme B
Tssr106010 11 116966731 to 116966735 4 + TSS region transcription start site region 106010
Cpgi4199 11 116968235 to 116968579 344 CpG island CpG island 4199
Cpgi4200 11 116968911 to 116969386 475 CpG island CpG island 4200
Cpgi4201 11 117028151 to 117028483 332 CpG island CpG island 4201
D11Dcr48 11 117030580 to 117030679 99 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 48
Gm11728 11 117035078 to 117040193 5115 - lincRNA gene predicted gene 11728
Tssr112011 11 117040168 to 117040180 12 - TSS region transcription start site region 112011
Tssr112012 11 117040182 to 117040200 18 - TSS region transcription start site region 112012
Tssr112013 11 117040226 to 117040235 9 - TSS region transcription start site region 112013
Tssr112014 11 117040315 to 117040325 10 - TSS region transcription start site region 112014
Gm11731 11 117058425 to 117060268 1843 + lincRNA gene predicted gene 11731
Cpgi4202 11 117076405 to 117077292 887 CpG island CpG island 4202
Tssr106011 11 117076767 to 117076840 73 + TSS region transcription start site region 106011
Snhg20 11 117076783 to 117078955 2172 + lincRNA gene small nucleolar RNA host gene 20
Tssr106012 11 117076841 to 117076852 11 + TSS region transcription start site region 106012
Tssr106013 11 117077172 to 117077205 33 + TSS region transcription start site region 106013
Tssr106014 11 117077239 to 117077245 6 + TSS region transcription start site region 106014
Gm26083 11 117077243 to 117077435 192 + snoRNA gene predicted gene, 26083
Mir6516 11 117077348 to 117077457 109 + miRNA gene microRNA 6516
Tssr112015 11 117078095 to 117078130 35 - TSS region transcription start site region 112015
Tssr112016 11 117078951 to 117078955 4 - TSS region transcription start site region 112016
Tssr112017 11 117083707 to 117083731 24 - TSS region transcription start site region 112017
Gm24323 11 117085836 to 117085912 76 + miRNA gene predicted gene, 24323
Tssr106015 11 117091989 to 117092000 11 + TSS region transcription start site region 106015
Gm11730 11 117094948 to 117097067 2119 - antisense lncRNA gene predicted gene 11730
Tssr106016 11 117109909 to 117109923 14 + TSS region transcription start site region 106016
Tssr106017 11 117109951 to 117109962 11 + TSS region transcription start site region 106017
Cpgi4203 11 117114464 to 117116133 1669 CpG island CpG island 4203
Tssr112018 11 117114953 to 117114964 11 - TSS region transcription start site region 112018
Tssr112019 11 117114981 to 117114998 17 - TSS region transcription start site region 112019
Tssr106018 11 117115133 to 117115186 53 + TSS region transcription start site region 106018
Sec14l1 11 117115172 to 117159268 44096 + protein coding gene SEC14-like lipid binding 1
Tssr106019 11 117115195 to 117115257 62 + TSS region transcription start site region 106019
Tssr106020 11 117115259 to 117115285 26 + TSS region transcription start site region 106020
Gm22667 11 117132490 to 117132817 327 + unclassified non-coding RNA gene predicted gene, 22667
Gm11745 11 117134598 to 117135045 447 + pseudogene predicted gene 11745
Tssr106021 11 117143816 to 117143865 49 + TSS region transcription start site region 106021
Tssr106022 11 117156366 to 117156385 19 + TSS region transcription start site region 106022
Tssr112020 11 117165717 to 117165742 25 - TSS region transcription start site region 112020
Stmm5 11 117167277 to 117167277 0 QTL skin tumor modifier of MSM 5
D11Mit103 11 117167319 to 117167465 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 103
Cpgi4204 11 117199200 to 117200159 959 CpG island CpG island 4204
Tssr106023 11 117199641 to 117199663 22 + TSS region transcription start site region 106023
Sept9 11 117199661 to 117362325 162664 + protein coding gene septin 9
Tssr106024 11 117199678 to 117199692 14 + TSS region transcription start site region 106024
Tssr106025 11 117199703 to 117199729 26 + TSS region transcription start site region 106025
Tssr106026 11 117200339 to 117200343 4 + TSS region transcription start site region 106026
Tssr106027 11 117204845 to 117204861 16 + TSS region transcription start site region 106027
Tssr106028 11 117228742 to 117228748 6 + TSS region transcription start site region 106028
Tssr106029 11 117231860 to 117231890 30 + TSS region transcription start site region 106029
Tssr106030 11 117231946 to 117231979 33 + TSS region transcription start site region 106030
Tssr106031 11 117232254 to 117232329 75 + TSS region transcription start site region 106031
Tssr106032 11 117232398 to 117232413 15 + TSS region transcription start site region 106032
D11Mit303.1 11 117238439 to 117238575 136 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 303.1
D11Mit303 11 117238606 to 117238711 105 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 303
Tssr106033 11 117241659 to 117241694 35 + TSS region transcription start site region 106033
Tssr106034 11 117249095 to 117249099 4 + TSS region transcription start site region 106034
Gm39478 11 117256929 to 117266233 9304 - lncRNA gene predicted gene, 39478
Gm16045 11 117257649 to 117263437 5788 - antisense lncRNA gene predicted gene 16045