Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:101465554-101865572

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vat1 11 101458748 to 101466199 7451 - protein coding gene vesicle amine transport 1
Cpgi3872 11 101464984 to 101466427 1443 CpG island CpG island 3872
Tssr110947 11 101465927 to 101465959 32 - TSS region transcription start site region 110947
Tssr110948 11 101466136 to 101466150 14 - TSS region transcription start site region 110948
Tssr110949 11 101466158 to 101466216 58 - TSS region transcription start site region 110949
Tssr110950 11 101466222 to 101466237 15 - TSS region transcription start site region 110950
Tssr110951 11 101466248 to 101466257 9 - TSS region transcription start site region 110951
Cpgi3873 11 101467253 to 101467427 174 CpG island CpG island 3873
Cpgi3874 11 101467625 to 101469052 1427 CpG island CpG island 3874
Tssr110952 11 101468024 to 101468066 42 - TSS region transcription start site region 110952
Tssr105128 11 101468138 to 101468149 11 + TSS region transcription start site region 105128
Tssr105129 11 101468164 to 101468175 11 + TSS region transcription start site region 105129
Tssr105130 11 101468181 to 101468192 11 + TSS region transcription start site region 105130
Tssr105131 11 101468200 to 101468235 35 + TSS region transcription start site region 105131
Tssr105132 11 101468236 to 101468249 13 + TSS region transcription start site region 105132
Tssr105133 11 101468333 to 101468354 21 + TSS region transcription start site region 105133
Rnd2 11 101468338 to 101471306 2968 + protein coding gene Rho family GTPase 2
Tssr105134 11 101468355 to 101468373 18 + TSS region transcription start site region 105134
Tssr105135 11 101469376 to 101469382 6 + TSS region transcription start site region 105135
Gm11625 11 101476226 to 101476521 295 + pseudogene predicted gene 11625
Brca1 11 101488764 to 101551955 63191 - protein coding gene breast cancer 1, early onset
D11Mit200 11 101545590 to 101545714 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 200
Cpgi3875 11 101551540 to 101553014 1474 CpG island CpG island 3875
Tssr110953 11 101551837 to 101551893 56 - TSS region transcription start site region 110953
Tssr105136 11 101552135 to 101552184 49 + TSS region transcription start site region 105136
Nbr1 11 101552149 to 101581951 29802 + protein coding gene NBR1, autophagy cargo receptor
Tssr105137 11 101552188 to 101552207 19 + TSS region transcription start site region 105137
Tssr105138 11 101552391 to 101552426 35 + TSS region transcription start site region 105138
Tssr105139 11 101552849 to 101552874 25 + TSS region transcription start site region 105139
Tssr105140 11 101553808 to 101553824 16 + TSS region transcription start site region 105140
D11Mit125 11 101558861 to 101559079 218 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 125
Tssr105141 11 101582236 to 101582312 76 + TSS region transcription start site region 105141
Tmem106a 11 101582242 to 101591788 9546 + protein coding gene transmembrane protein 106A
Tssr105142 11 101583416 to 101583476 60 + TSS region transcription start site region 105142
Tssr105143 11 101583484 to 101583494 10 + TSS region transcription start site region 105143
Tssr105144 11 101583573 to 101583593 20 + TSS region transcription start site region 105144
Tssr105145 11 101583611 to 101583630 19 + TSS region transcription start site region 105145
Tssr105146 11 101583722 to 101583733 11 + TSS region transcription start site region 105146
Tssr105147 11 101584437 to 101584477 40 + TSS region transcription start site region 105147
Tssr105148 11 101586232 to 101586322 90 + TSS region transcription start site region 105148
Tssr105149 11 101587915 to 101587964 49 + TSS region transcription start site region 105149
Tssr105150 11 101588906 to 101588924 18 + TSS region transcription start site region 105150
Tssr110954 11 101591782 to 101591786 4 - TSS region transcription start site region 110954
Gm11634 11 101593743 to 101599256 5513 - protein coding gene predicted gene 11634
Tssr3678 11 101593981 to 101593987 6 - TSS region transcription start site region 3678
Tssr110955 11 101599229 to 101599255 26 - TSS region transcription start site region 110955
Tssr110956 11 101599260 to 101599271 11 - TSS region transcription start site region 110956
Cpgi3876 11 101604558 to 101604848 290 CpG island CpG island 3876
Gm26316 11 101604850 to 101605040 190 + snRNA gene predicted gene, 26316
Cpgi3877 11 101610578 to 101610769 191 CpG island CpG island 3877
Gm11635 11 101610614 to 101615956 5342 + lincRNA gene predicted gene 11635
Tssr105151 11 101610648 to 101610662 14 + TSS region transcription start site region 105151
Tssr105152 11 101610686 to 101610693 7 + TSS region transcription start site region 105152
D11Nds2 11 101626367 to 101626505 138 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 2
Cpgi3878 11 101626897 to 101627337 440 CpG island CpG island 3878
Tssr110957 11 101626941 to 101626943 2 - TSS region transcription start site region 110957
Rdm1 11 101627242 to 101636089 8847 + protein coding gene RAD52 motif 1
Gm23849 11 101627366 to 101627556 190 + snRNA gene predicted gene, 23849
Cpgi3879 11 101627894 to 101628484 590 CpG island CpG island 3879
Tssr105153 11 101627943 to 101627972 29 + TSS region transcription start site region 105153
Tssr105154 11 101640046 to 101640051 5 + TSS region transcription start site region 105154
Cpgi3880 11 101641256 to 101641510 254 CpG island CpG island 3880
Gm24950 11 101641748 to 101641938 190 + snRNA gene predicted gene, 24950
Tssr105155 11 101642783 to 101642788 5 + TSS region transcription start site region 105155
Gm23971 11 101645740 to 101645930 190 - snRNA gene predicted gene, 23971
Cpgi3881 11 101646034 to 101646268 234 CpG island CpG island 3881
Cpgi3882 11 101657942 to 101658202 260 CpG island CpG island 3882
Rnu2-10 11 101658238 to 101658424 186 + snRNA gene U2 small nuclear RNA 10
Cpgi3883 11 101665284 to 101665963 679 CpG island CpG island 3883
Arl4d 11 101665541 to 101667832 2291 + protein coding gene ADP-ribosylation factor-like 4D
Tssr105156 11 101665554 to 101665572 18 + TSS region transcription start site region 105156
Tssr110958 11 101675465 to 101675496 31 - TSS region transcription start site region 110958
Tssr105157 11 101682857 to 101682869 12 + TSS region transcription start site region 105157
Gm39391 11 101696251 to 101697580 1329 + lncRNA gene predicted gene, 39391
Cpgi3884 11 101720008 to 101720421 413 CpG island CpG island 3884
D11Mit265 11 101728496 to 101728624 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 265
Cpgi3885 11 101732614 to 101733361 747 CpG island CpG island 3885
Tssr105158 11 101732900 to 101732903 3 + TSS region transcription start site region 105158
Tssr105159 11 101732952 to 101732965 13 + TSS region transcription start site region 105159
Dhx8 11 101732956 to 101767358 34402 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 8
Tssr105160 11 101732977 to 101733008 31 + TSS region transcription start site region 105160
Tssr105161 11 101733011 to 101733040 29 + TSS region transcription start site region 105161
Etv4 11 101769747 to 101785310 15563 - protein coding gene ets variant 4
Tssr110959 11 101770378 to 101770406 28 - TSS region transcription start site region 110959
Tssr110960 11 101771439 to 101771461 22 - TSS region transcription start site region 110960
Tssr110961 11 101774182 to 101774191 9 - TSS region transcription start site region 110961
Cpgi3886 11 101784066 to 101785808 1742 CpG island CpG island 3886
Tssr110962 11 101784285 to 101784318 33 - TSS region transcription start site region 110962
Tssr110963 11 101784322 to 101784350 28 - TSS region transcription start site region 110963
Tssr110964 11 101784427 to 101784441 14 - TSS region transcription start site region 110964
Tssr110965 11 101784460 to 101784481 21 - TSS region transcription start site region 110965
Tssr110966 11 101784516 to 101784567 51 - TSS region transcription start site region 110966
Tssr110967 11 101784608 to 101784637 29 - TSS region transcription start site region 110967
Tssr110968 11 101784666 to 101784675 9 - TSS region transcription start site region 110968
Tssr110969 11 101784813 to 101784833 20 - TSS region transcription start site region 110969
Tssr110970 11 101784841 to 101784856 15 - TSS region transcription start site region 110970
Tssr110971 11 101785166 to 101785182 16 - TSS region transcription start site region 110971
Tssr110972 11 101785202 to 101785220 18 - TSS region transcription start site region 110972
Tssr110973 11 101785225 to 101785241 16 - TSS region transcription start site region 110973
Tssr110974 11 101785252 to 101785289 37 - TSS region transcription start site region 110974
Gm39392 11 101785477 to 101789152 3675 + lncRNA gene predicted gene, 39392
Tssr105162 11 101787728 to 101787738 10 + TSS region transcription start site region 105162
Tssr105163 11 101787764 to 101787776 12 + TSS region transcription start site region 105163