Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100611022-101031026

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnajc7 11 100582818 to 100620168 37350 - protein coding gene DnaJ heat shock protein family (Hsp40) member C7
Tssr110837 11 100613334 to 100613368 34 - TSS region transcription start site region 110837
Tssr110838 11 100613384 to 100613389 5 - TSS region transcription start site region 110838
Tssr110839 11 100613391 to 100613400 9 - TSS region transcription start site region 110839
Tssr110840 11 100613402 to 100613407 5 - TSS region transcription start site region 110840
Cpgi3821 11 100618887 to 100620092 1205 CpG island CpG island 3821
Tssr104951 11 100619217 to 100619283 66 + TSS region transcription start site region 104951
Tssr110841 11 100619593 to 100619596 3 - TSS region transcription start site region 110841
Tssr110842 11 100619598 to 100619657 59 - TSS region transcription start site region 110842
Tssr110843 11 100619674 to 100619685 11 - TSS region transcription start site region 110843
Tssr104952 11 100619729 to 100619760 31 + TSS region transcription start site region 104952
Nkiras2 11 100619856 to 100627610 7754 + protein coding gene NFKB inhibitor interacting Ras-like protein 2
Tssr110844 11 100620165 to 100620209 44 - TSS region transcription start site region 110844
Cpgi3822 11 100622692 to 100623290 598 CpG island CpG island 3822
Tssr3672 11 100622861 to 100622868 7 + TSS region transcription start site region 3672
Tssr104953 11 100622870 to 100622881 11 + TSS region transcription start site region 104953
Tssr104954 11 100622883 to 100622920 37 + TSS region transcription start site region 104954
Tssr104955 11 100622921 to 100622970 49 + TSS region transcription start site region 104955
Tssr104956 11 100622971 to 100622987 16 + TSS region transcription start site region 104956
Tssr104957 11 100624082 to 100624100 18 + TSS region transcription start site region 104957
Tssr104958 11 100626902 to 100626920 18 + TSS region transcription start site region 104958
Zfp385c 11 100627543 to 100692455 64912 - protein coding gene zinc finger protein 385C
Cpgi3823 11 100639932 to 100640901 969 CpG island CpG island 3823
Gm44544 11 100639944 to 100643117 3173 - pseudogene predicted gene 44544
Tssr110845 11 100650711 to 100650749 38 - TSS region transcription start site region 110845
Cpgi3824 11 100657328 to 100657544 216 CpG island CpG island 3824
Cpgi3825 11 100673145 to 100673410 265 CpG island CpG island 3825
Dhx58os 11 100687417 to 100697520 10103 + antisense lncRNA gene DEAH (Asp-Glu-Ala-His) box polypeptide 58, opposite strand
Gm38483 11 100689738 to 100697529 7791 + lncRNA gene predicted gene, 38483
Cpgi3826 11 100692155 to 100692316 161 CpG island CpG island 3826
Tssr110846 11 100692440 to 100692473 33 - TSS region transcription start site region 110846
Dhx58 11 100694884 to 100704271 9387 - protein coding gene DEXH (Asp-Glu-X-His) box polypeptide 58
Cpgi3827 11 100701229 to 100701437 208 CpG island CpG island 3827
Tssr110847 11 100701411 to 100701447 36 - TSS region transcription start site region 110847
Tssr110848 11 100703714 to 100703733 19 - TSS region transcription start site region 110848
Tssr110849 11 100704065 to 100704077 12 - TSS region transcription start site region 110849
Tssr110850 11 100704217 to 100704276 59 - TSS region transcription start site region 110850
Kat2a 11 100704746 to 100712465 7719 - protein coding gene K(lysine) acetyltransferase 2A
Cpgi3828 11 100711848 to 100712773 925 CpG island CpG island 3828
Tssr110851 11 100712346 to 100712355 9 - TSS region transcription start site region 110851
Tssr110852 11 100712429 to 100712476 47 - TSS region transcription start site region 110852
Cpgi3829 11 100713626 to 100714411 785 CpG island CpG island 3829
Hspb9 11 100713850 to 100714575 725 + protein coding gene heat shock protein, alpha-crystallin-related, B9
Tssr104959 11 100713917 to 100713938 21 + TSS region transcription start site region 104959
Tssr104960 11 100713954 to 100713965 11 + TSS region transcription start site region 104960
Rab5c 11 100715009 to 100738215 23206 - protein coding gene RAB5C, member RAS oncogene family
Tssr104961 11 100715265 to 100715273 8 + TSS region transcription start site region 104961
Tssr110853 11 100715354 to 100715376 22 - TSS region transcription start site region 110853
Tssr110854 11 100715774 to 100715801 27 - TSS region transcription start site region 110854
Tssr110855 11 100715884 to 100715894 10 - TSS region transcription start site region 110855
Tssr110856 11 100716012 to 100716053 41 - TSS region transcription start site region 110856
Tssr110857 11 100718568 to 100718587 19 - TSS region transcription start site region 110857
Tssr110858 11 100720109 to 100720127 18 - TSS region transcription start site region 110858
Tssr110859 11 100720144 to 100720155 11 - TSS region transcription start site region 110859
Tssr110860 11 100721314 to 100721320 6 - TSS region transcription start site region 110860
Tssr110861 11 100724224 to 100724256 32 - TSS region transcription start site region 110861
Tssr110862 11 100724280 to 100724291 11 - TSS region transcription start site region 110862
Tssr104962 11 100736223 to 100736235 12 + TSS region transcription start site region 104962
Tssr104963 11 100736254 to 100736280 26 + TSS region transcription start site region 104963
Cpgi3830 11 100737902 to 100738708 806 CpG island CpG island 3830
Tssr110863 11 100738114 to 100738140 26 - TSS region transcription start site region 110863
Tssr110864 11 100738153 to 100738212 59 - TSS region transcription start site region 110864
Kcnh4 11 100740376 to 100759942 19566 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 4
Cpgi3831 11 100749420 to 100750501 1081 CpG island CpG island 3831
Tssr110865 11 100752905 to 100752907 2 - TSS region transcription start site region 110865
Cpgi3832 11 100759272 to 100760174 902 CpG island CpG island 3832
Tssr110866 11 100759741 to 100759754 13 - TSS region transcription start site region 110866
Tssr110867 11 100759995 to 100760011 16 - TSS region transcription start site region 110867
Cpgi3833 11 100761604 to 100762286 682 CpG island CpG island 3833
Hcrt 11 100761693 to 100762931 1238 - protein coding gene hypocretin
Tssr110868 11 100762931 to 100762936 5 - TSS region transcription start site region 110868
Ghdc 11 100766032 to 100770957 4925 - protein coding gene GH3 domain containing
Tssr110869 11 100770926 to 100770964 38 - TSS region transcription start site region 110869
Gm24358 11 100774513 to 100774800 287 - unclassified non-coding RNA gene predicted gene, 24358
Stat5b 11 100780731 to 100850724 69993 - protein coding gene signal transducer and activator of transcription 5B
Tssr110870 11 100803849 to 100803861 12 - TSS region transcription start site region 110870
Tssr110871 11 100803972 to 100803986 14 - TSS region transcription start site region 110871
Tssr110872 11 100821022 to 100821026 4 - TSS region transcription start site region 110872
Tssr110873 11 100822480 to 100822491 11 - TSS region transcription start site region 110873
Tssr110874 11 100822508 to 100822517 9 - TSS region transcription start site region 110874
Tssr110875 11 100822525 to 100822576 51 - TSS region transcription start site region 110875
Tssr104964 11 100824216 to 100824239 23 + TSS region transcription start site region 104964
Tssr110876 11 100845897 to 100845911 14 - TSS region transcription start site region 110876
Tssr110877 11 100846007 to 100846018 11 - TSS region transcription start site region 110877
Tssr110878 11 100846056 to 100846064 8 - TSS region transcription start site region 110878
Tssr104965 11 100846269 to 100846277 8 + TSS region transcription start site region 104965
Tssr104966 11 100846302 to 100846317 15 + TSS region transcription start site region 104966
Tssr110879 11 100848135 to 100848181 46 - TSS region transcription start site region 110879
Tssr110880 11 100848404 to 100848413 9 - TSS region transcription start site region 110880
Tssr104967 11 100849627 to 100849638 11 + TSS region transcription start site region 104967
Cpgi3834 11 100849800 to 100851461 1661 CpG island CpG island 3834
Tssr104968 11 100850047 to 100850061 14 + TSS region transcription start site region 104968
Tssr110881 11 100850487 to 100850596 109 - TSS region transcription start site region 110881
Tssr110882 11 100850739 to 100850763 24 - TSS region transcription start site region 110882
Stat5a 11 100859351 to 100885169 25818 + protein coding gene signal transducer and activator of transcription 5A
Tssr104969 11 100859453 to 100859483 30 + TSS region transcription start site region 104969
Tssr104970 11 100859492 to 100859506 14 + TSS region transcription start site region 104970
Tssr104971 11 100859869 to 100859885 16 + TSS region transcription start site region 104971
Tssr104972 11 100860111 to 100860116 5 + TSS region transcription start site region 104972
Tssr104973 11 100860178 to 100860185 7 + TSS region transcription start site region 104973
Cpgi3835 11 100860193 to 100860875 682 CpG island CpG island 3835
Tssr104974 11 100860270 to 100860273 3 + TSS region transcription start site region 104974
Tssr104975 11 100860292 to 100860302 10 + TSS region transcription start site region 104975
Tssr104976 11 100860326 to 100860344 18 + TSS region transcription start site region 104976
Tssr104977 11 100860349 to 100860350 1 + TSS region transcription start site region 104977
Tssr104978 11 100860418 to 100860428 10 + TSS region transcription start site region 104978
Tssr104979 11 100860447 to 100860537 90 + TSS region transcription start site region 104979
Tssr104980 11 100860647 to 100860654 7 + TSS region transcription start site region 104980
Tssr104981 11 100862155 to 100862179 24 + TSS region transcription start site region 104981
Tssr110883 11 100882145 to 100882173 28 - TSS region transcription start site region 110883
Tssr104982 11 100884374 to 100884390 16 + TSS region transcription start site region 104982
Tssr104983 11 100884633 to 100884644 11 + TSS region transcription start site region 104983
Stat3 11 100886806 to 100939579 52773 - protein coding gene signal transducer and activator of transcription 3
Tssr110884 11 100888574 to 100888584 10 - TSS region transcription start site region 110884
Tssr110885 11 100889552 to 100889577 25 - TSS region transcription start site region 110885
Tssr110886 11 100903459 to 100903470 11 - TSS region transcription start site region 110886
Tssr110887 11 100918105 to 100918107 2 - TSS region transcription start site region 110887
Tssr110888 11 100931449 to 100931453 4 - TSS region transcription start site region 110888
Gm46295 11 100935442 to 100940242 4800 + lncRNA gene predicted gene, 46295
Tssr3673 11 100938749 to 100938767 18 + TSS region transcription start site region 3673
Cpgi3836 11 100938928 to 100939958 1030 CpG island CpG island 3836
Tssr110889 11 100939307 to 100939319 12 - TSS region transcription start site region 110889
Tssr110890 11 100939327 to 100939355 28 - TSS region transcription start site region 110890
Tssr110891 11 100939357 to 100939456 99 - TSS region transcription start site region 110891
Tssr110892 11 100939457 to 100939484 27 - TSS region transcription start site region 110892
Tssr110893 11 100939555 to 100939566 11 - TSS region transcription start site region 110893
Tssr110894 11 100939587 to 100939607 20 - TSS region transcription start site region 110894
Tssr104984 11 100939857 to 100939871 14 + TSS region transcription start site region 104984
Tssr104985 11 100940118 to 100940146 28 + TSS region transcription start site region 104985
Tssr110895 11 100955209 to 100955213 4 - TSS region transcription start site region 110895
Cavin1 11 100956733 to 100970887 14154 - protein coding gene caveolae associated 1
Tssr110896 11 100956921 to 100956927 6 - TSS region transcription start site region 110896
Tssr110897 11 100956966 to 100957001 35 - TSS region transcription start site region 110897
Tssr110898 11 100957982 to 100957993 11 - TSS region transcription start site region 110898
Cpgi3837 11 100958381 to 100959469 1088 CpG island CpG island 3837
Tssr110899 11 100958899 to 100958906 7 - TSS region transcription start site region 110899
D11Mit250.1 11 100961545 to 100961727 182 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250.1
D11Mit250 11 100961670 to 100961801 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250
D11Mit250.2 11 100961770 to 100961881 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250.2
Cpgi3838 11 100969147 to 100970846 1699 CpG island CpG island 3838
Tssr110900 11 100969722 to 100969756 34 - TSS region transcription start site region 110900
Tssr104986 11 100969864 to 100969894 30 + TSS region transcription start site region 104986
Tssr110901 11 100970157 to 100970175 18 - TSS region transcription start site region 110901
Tssr110902 11 100970521 to 100970532 11 - TSS region transcription start site region 110902
Tssr110903 11 100970538 to 100970551 13 - TSS region transcription start site region 110903
Tssr110904 11 100970570 to 100970583 13 - TSS region transcription start site region 110904
Tssr110905 11 100970605 to 100970631 26 - TSS region transcription start site region 110905
Tssr110906 11 100984868 to 100984878 10 - TSS region transcription start site region 110906
Cpgi3839 11 101009239 to 101009897 658 CpG island CpG island 3839
Tssr110907 11 101009314 to 101009349 35 - TSS region transcription start site region 110907
Atp6v0a1 11 101009452 to 101063719 54267 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A1
Tssr104987 11 101009465 to 101009528 63 + TSS region transcription start site region 104987
Tssr104988 11 101009529 to 101009538 9 + TSS region transcription start site region 104988
Cpgi3840 11 101010460 to 101010614 154 CpG island CpG island 3840
Tssr104989 11 101011748 to 101011765 17 + TSS region transcription start site region 104989
Tssr104990 11 101011993 to 101011997 4 + TSS region transcription start site region 104990
Tssr104991 11 101012074 to 101012081 7 + TSS region transcription start site region 104991
Tssr104992 11 101016045 to 101016059 14 + TSS region transcription start site region 104992
C030015D21Rik 11 101019348 to 101020025 677 unclassified gene RIKEN cDNA C030015D21 gene
Tssr110908 11 101020502 to 101020526 24 - TSS region transcription start site region 110908
Tssr104993 11 101020954 to 101020969 15 + TSS region transcription start site region 104993
Tssr104994 11 101021437 to 101021451 14 + TSS region transcription start site region 104994
Tssr104995 11 101022684 to 101022692 8 + TSS region transcription start site region 104995
Tssr104996 11 101022735 to 101022746 11 + TSS region transcription start site region 104996
Tssr104997 11 101022875 to 101022886 11 + TSS region transcription start site region 104997
Tssr104998 11 101022902 to 101022924 22 + TSS region transcription start site region 104998
Tssr104999 11 101022933 to 101022937 4 + TSS region transcription start site region 104999
Tssr105000 11 101022958 to 101022972 14 + TSS region transcription start site region 105000
Tssr105001 11 101022979 to 101022986 7 + TSS region transcription start site region 105001
Tssr105002 11 101023068 to 101023081 13 + TSS region transcription start site region 105002
Tssr105003 11 101023103 to 101023125 22 + TSS region transcription start site region 105003
Tssr105004 11 101023128 to 101023158 30 + TSS region transcription start site region 105004
Tssr105005 11 101023279 to 101023286 7 + TSS region transcription start site region 105005
Tssr105006 11 101023294 to 101023308 14 + TSS region transcription start site region 105006
Tssr105007 11 101024616 to 101024660 44 + TSS region transcription start site region 105007
Tssr105008 11 101024971 to 101024974 3 + TSS region transcription start site region 105008
Tssr105009 11 101026423 to 101026438 15 + TSS region transcription start site region 105009
Mir6928 11 101030340 to 101030409 69 + miRNA gene microRNA 6928
Tssr105010 11 101030403 to 101030430 27 + TSS region transcription start site region 105010