Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:74385511-74594284

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
Slc11a1 1 74375195 to 74386062 10867 + protein coding gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
Cpgi378 1 74386714 to 74387085 371 CpG island CpG island 378
Cpgi379 1 74389677 to 74390264 587 CpG island CpG island 379
Cpgi380 1 74391290 to 74392820 1530 CpG island CpG island 380
Tssr7405 1 74391390 to 74391397 7 + TSS region transcription start site region 7405
Tssr7406 1 74391416 to 74391477 61 + TSS region transcription start site region 7406
Tssr7407 1 74391479 to 74391495 16 + TSS region transcription start site region 7407
Tssr7408 1 74391541 to 74391550 9 + TSS region transcription start site region 7408
Tssr7409 1 74391562 to 74391573 11 + TSS region transcription start site region 7409
Tssr7410 1 74391577 to 74391594 17 + TSS region transcription start site region 7410
Ctdsp1 1 74391609 to 74397285 5676 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Tssr7411 1 74391632 to 74391684 52 + TSS region transcription start site region 7411
Tssr7412 1 74391687 to 74391716 29 + TSS region transcription start site region 7412
Tssr7413 1 74391740 to 74391760 20 + TSS region transcription start site region 7413
Tssr7414 1 74391805 to 74391829 24 + TSS region transcription start site region 7414
Tssr7415 1 74391847 to 74391870 23 + TSS region transcription start site region 7415
Tssr7416 1 74391872 to 74391885 13 + TSS region transcription start site region 7416
Tssr7417 1 74393269 to 74393280 11 + TSS region transcription start site region 7417
Cpgi381 1 74393821 to 74394058 237 CpG island CpG island 381
Tssr12306 1 74393854 to 74393881 27 - TSS region transcription start site region 12306
Tssr164676 1 74393893 to 74393900 7 - TSS region transcription start site region 164676
Tssr12307 1 74394044 to 74394084 40 - TSS region transcription start site region 12307
Mir26b 1 74394310 to 74394394 84 + miRNA gene microRNA 26b
Cpgi382 1 74394646 to 74395006 360 CpG island CpG island 382
Tssr12308 1 74394659 to 74394672 13 - TSS region transcription start site region 12308
Tssr164677 1 74394680 to 74394691 11 - TSS region transcription start site region 164677
Tssr12309 1 74394697 to 74394709 12 - TSS region transcription start site region 12309
Tssr12310 1 74394921 to 74394944 23 - TSS region transcription start site region 12310
Cpgi383 1 74395457 to 74395670 213 CpG island CpG island 383
Tssr12311 1 74395579 to 74395590 11 - TSS region transcription start site region 12311
Tssr164673 1 74395650 to 74395678 28 + TSS region transcription start site region 164673
Tssr164678 1 74395929 to 74395953 24 - TSS region transcription start site region 164678
Tssr7418 1 74396556 to 74396573 17 + TSS region transcription start site region 7418
Tssr164679 1 74396585 to 74396598 13 - TSS region transcription start site region 164679
Tssr12312 1 74397026 to 74397057 31 - TSS region transcription start site region 12312
Tssr164674 1 74397196 to 74397209 13 + TSS region transcription start site region 164674
Tssr164675 1 74397226 to 74397237 11 + TSS region transcription start site region 164675
Cpgi384 1 74397289 to 74397893 604 CpG island CpG island 384
Tssr7419 1 74409198 to 74409228 30 + TSS region transcription start site region 7419
Tssr7420 1 74409382 to 74409399 17 + TSS region transcription start site region 7420
Vil1 1 74409384 to 74435560 26176 + protein coding gene villin 1
D1Mit24 1 74411680 to 74411881 201 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 24
Tssr12313 1 74415143 to 74415154 11 - TSS region transcription start site region 12313
Tssr7421 1 74418435 to 74418440 5 + TSS region transcription start site region 7421
Tssr7422 1 74423925 to 74423934 9 + TSS region transcription start site region 7422
Tssr7423 1 74427355 to 74427360 5 + TSS region transcription start site region 7423
Tssr7424 1 74432344 to 74432373 29 + TSS region transcription start site region 7424
Usp37 1 74435511 to 74544284 108773 - protein coding gene ubiquitin specific peptidase 37
Tssr12314 1 74438892 to 74438902 10 - TSS region transcription start site region 12314
D1Mit181 1 74477076 to 74477206 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 181
Gm37733 1 74500340 to 74503301 2961 - unclassified gene predicted gene, 37733
Cpgi385 1 74505311 to 74506917 1606 CpG island CpG island 385
Tssr12315 1 74505680 to 74505713 33 - TSS region transcription start site region 12315
Tssr12316 1 74505787 to 74505844 57 - TSS region transcription start site region 12316
Tssr7425 1 74506023 to 74506038 15 + TSS region transcription start site region 7425
Tssr7426 1 74506044 to 74506105 61 + TSS region transcription start site region 7426
Cnot9 1 74506058 to 74530842 24784 + protein coding gene CCR4-NOT transcription complex, subunit 9
Tssr7427 1 74506111 to 74506120 9 + TSS region transcription start site region 7427
Tssr7428 1 74506309 to 74506374 65 + TSS region transcription start site region 7428
Tssr7429 1 74506378 to 74506387 9 + TSS region transcription start site region 7429
Tssr7430 1 74506702 to 74506718 16 + TSS region transcription start site region 7430
Tssr7431 1 74511407 to 74511416 9 + TSS region transcription start site region 7431
Tssr7432 1 74529248 to 74529252 4 + TSS region transcription start site region 7432
Tssr7433 1 74541433 to 74541449 16 + TSS region transcription start site region 7433
Tssr122 1 74541459 to 74541466 7 + TSS region transcription start site region 122
Plcd4 1 74541791 to 74565977 24186 + protein coding gene phospholipase C, delta 4
Tssr7434 1 74542861 to 74542877 16 + TSS region transcription start site region 7434
Tssr7435 1 74542881 to 74542918 37 + TSS region transcription start site region 7435
Tssr12317 1 74544275 to 74544307 32 - TSS region transcription start site region 12317
Tssr7436 1 74544345 to 74544367 22 + TSS region transcription start site region 7436
Zfp142 1 74566423 to 74588073 21650 - protein coding gene zinc finger protein 142
Gm25035 1 74586896 to 74586972 76 - miRNA gene predicted gene, 25035
Cpgi386 1 74587422 to 74588565 1143 CpG island CpG island 386
Tssr12318 1 74587964 to 74588041 77 - TSS region transcription start site region 12318
Tssr12319 1 74588117 to 74588145 28 - TSS region transcription start site region 12319
Tssr12320 1 74588212 to 74588230 18 - TSS region transcription start site region 12320
Bcs1l 1 74588289 to 74592443 4154 + protein coding gene BCS1-like (yeast)
Tssr7437 1 74588309 to 74588328 19 + TSS region transcription start site region 7437
Tssr7438 1 74588347 to 74588383 36 + TSS region transcription start site region 7438
Rnf25 1 74593748 to 74601397 7649 - protein coding gene ring finger protein 25
Gcsfis 1 148839837 to 74477076 -74362761 QTL G-CSF induced splenomegaly