Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:6827782-9437961

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
St18 1 6487231 to 6860940 373709 + protein coding gene suppression of tumorigenicity 18
Tssr5876 1 6842004 to 6842028 24 + TSS region transcription start site region 5876
Gm42492 1 6861237 to 6864151 2914 - unclassified gene predicted gene 42492
Gm7449 1 6910560 to 6911222 662 + pseudogene predicted gene 7449
Tssr5877 1 6916534 to 6916536 2 + TSS region transcription start site region 5877
Gm37108 1 6916559 to 6923588 7029 + pseudogene predicted gene, 37108
Gm37275 1 6929759 to 6929788 29 + pseudogene predicted gene, 37275
Tssr5878 1 6995220 to 6995221 1 + TSS region transcription start site region 5878
Gm37225 1 6998217 to 6998541 324 + pseudogene predicted gene, 37225
Gm37489 1 7013762 to 7013920 158 + pseudogene predicted gene, 37489
Gm5694 1 7035915 to 7037217 1302 + pseudogene predicted gene 5694
Tssr5879 1 7068363 to 7068364 1 + TSS region transcription start site region 5879
Cpgi20 1 7088385 to 7089443 1058 CpG island CpG island 20
Tssr10911 1 7088711 to 7088718 7 - TSS region transcription start site region 10911
Tssr10912 1 7088740 to 7088782 42 - TSS region transcription start site region 10912
Tssr5880 1 7088917 to 7088993 76 + TSS region transcription start site region 5880
Pcmtd1 1 7088920 to 7173628 84708 + protein coding gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
Tssr5881 1 7088998 to 7089077 79 + TSS region transcription start site region 5881
Tssr5882 1 7089101 to 7089117 16 + TSS region transcription start site region 5882
Tssr5883 1 7089130 to 7089178 48 + TSS region transcription start site region 5883
Tssr5884 1 7089187 to 7089200 13 + TSS region transcription start site region 5884
Tssr5885 1 7098126 to 7098131 5 + TSS region transcription start site region 5885
Tssr5886 1 7111646 to 7111660 14 + TSS region transcription start site region 5886
Tssr5887 1 7119819 to 7119825 6 + TSS region transcription start site region 5887
Tssr3 1 7130807 to 7130811 4 + TSS region transcription start site region 3
Gm26983 1 7136199 to 7136586 387 - pseudogene predicted gene, 26983
Tssr10913 1 7136613 to 7136616 3 - TSS region transcription start site region 10913
Gm38372 1 7148110 to 7152137 4027 + unclassified gene predicted gene, 38372
Tssr5888 1 7177671 to 7177679 8 + TSS region transcription start site region 5888
Gm9826 1 7177739 to 7179037 1298 + pseudogene predicted gene 9826
Nras-ps2 1 7189742 to 7189919 177 - pseudogene neuroblastoma ras oncogene, pseudogene 2
Tssr5889 1 7204211 to 7204213 2 + TSS region transcription start site region 5889
Gm23274 1 7265803 to 7265932 129 + snoRNA gene predicted gene, 23274
D1Mit428 1 7267494 to 7267606 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 428
D1Mit428.2 1 7267575 to 7267701 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 428.2
Gm19002 1 7315451 to 7316462 1011 + pseudogene predicted gene, 19002
Gm26901 1 7349406 to 7397869 48463 - lincRNA gene predicted gene, 26901
Tssr10914 1 7397072 to 7397076 4 - TSS region transcription start site region 10914
Cpgi21 1 7397680 to 7398709 1029 CpG island CpG island 21
Gm18984 1 7411181 to 7411996 815 + pseudogene predicted gene, 18984
Gm30414 1 7497968 to 7518149 20181 + lincRNA gene predicted gene, 30414
Gm37791 1 7591646 to 7591931 285 + pseudogene predicted gene, 37791
Gm7470 1 7597379 to 7599473 2094 + pseudogene predicted gene 7470
Rps2-ps2 1 7664081 to 7664961 880 + pseudogene ribosomal protein S2, pseudogene 2
Gm38216 1 7728861 to 7730565 1704 - pseudogene predicted gene, 38216
Gm17903 1 7767622 to 7768739 1117 - pseudogene predicted gene, 17903
Gm39589 1 8108629 to 8122449 13820 - lncRNA gene predicted gene, 39589
Cia20 1 8132782 to 8132961 179 QTL collagen induced arthritis QTL 20
Alcp25 1 8132782 to 8132961 179 QTL alcohol preference locus 25, male specific
D1Mit65 1 8132782 to 8132961 179 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 65
Sntg1 1 8361475 to 9299878 938403 - protein coding gene syntrophin, gamma 1
Gm38024 1 8450960 to 8453491 2531 - unclassified gene predicted gene, 38024
Gm16284 1 8468426 to 8468825 399 - pseudogene predicted gene 16284
Gm38259 1 8527780 to 8531313 3533 - unclassified gene predicted gene, 38259
Gm23358 1 8588615 to 8588724 109 - miRNA gene predicted gene, 23358
Gm37005 1 8643696 to 8644859 1163 - unclassified gene predicted gene, 37005
Gm15452 1 8791923 to 8792162 239 - pseudogene predicted gene 15452
Gm36964 1 8815842 to 8816039 197 + pseudogene predicted gene, 36964
Gm24276 1 8816138 to 8816247 109 + miRNA gene predicted gene, 24276
Gm6152 1 8855928 to 8856267 339 - pseudogene predicted gene 6152
Gm7445 1 8856763 to 8857102 339 + pseudogene predicted gene 7445
Tssr5890 1 8936384 to 8936402 18 + TSS region transcription start site region 5890
Tssr5891 1 8936405 to 8936416 11 + TSS region transcription start site region 5891
Gm7493 1 8962996 to 8963621 625 - pseudogene predicted gene 7493
Gm37629 1 9191067 to 9192116 1049 - unclassified gene predicted gene, 37629
Gm38008 1 9258617 to 9259134 517 - pseudogene predicted gene, 38008
Gm37143 1 9286922 to 9290180 3258 + unclassified gene predicted gene, 37143
Tssr10915 1 9298499 to 9298512 13 - TSS region transcription start site region 10915
Cpgi22 1 9298685 to 9300179 1494 CpG island CpG island 22
Tssr10916 1 9298821 to 9298878 57 - TSS region transcription start site region 10916
Tssr10917 1 9299251 to 9299306 55 - TSS region transcription start site region 10917
Tssr10918 1 9299669 to 9299689 20 - TSS region transcription start site region 10918
Tssr5892 1 9377649 to 9377653 4 + TSS region transcription start site region 5892
Gm6187 1 9396668 to 9398567 1899 - pseudogene predicted gene 6187
Gm30719 1 9437054 to 9438070 1016 + lncRNA gene predicted gene, 30719