Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:6437782-9827961

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm19026 1 6429658 to 6441296 11638 - pseudogene predicted gene, 19026
Cpgi19 1 6440858 to 6441884 1026 CpG island CpG island 19
Tssr10909 1 6443557 to 6443567 10 - TSS region transcription start site region 10909
Tssr5831 1 6453818 to 6453830 12 + TSS region transcription start site region 5831
Tssr5832 1 6453842 to 6453853 11 + TSS region transcription start site region 5832
Tssr10910 1 6454279 to 6454305 26 - TSS region transcription start site region 10910
Tssr5833 1 6475233 to 6475244 11 + TSS region transcription start site region 5833
Tssr5834 1 6482756 to 6482786 30 + TSS region transcription start site region 5834
St18 1 6487231 to 6860940 373709 + protein coding gene suppression of tumorigenicity 18
Tssr5835 1 6487307 to 6487338 31 + TSS region transcription start site region 5835
Tssr5836 1 6487371 to 6487378 7 + TSS region transcription start site region 5836
Tssr5837 1 6489175 to 6489200 25 + TSS region transcription start site region 5837
Tssr5838 1 6489217 to 6489245 28 + TSS region transcription start site region 5838
Tssr5839 1 6500370 to 6500397 27 + TSS region transcription start site region 5839
Tssr5840 1 6507835 to 6507838 3 + TSS region transcription start site region 5840
Tssr5841 1 6518504 to 6518516 12 + TSS region transcription start site region 5841
Tssr5842 1 6518662 to 6518683 21 + TSS region transcription start site region 5842
Tssr5843 1 6527812 to 6527860 48 + TSS region transcription start site region 5843
Tssr5844 1 6527913 to 6527936 23 + TSS region transcription start site region 5844
Tssr5845 1 6527954 to 6527987 33 + TSS region transcription start site region 5845
Tssr5846 1 6528005 to 6528017 12 + TSS region transcription start site region 5846
Tssr5847 1 6528092 to 6528108 16 + TSS region transcription start site region 5847
Tssr5848 1 6528253 to 6528274 21 + TSS region transcription start site region 5848
Tssr5849 1 6528276 to 6528310 34 + TSS region transcription start site region 5849
Tssr5850 1 6537391 to 6537423 32 + TSS region transcription start site region 5850
Tssr5851 1 6539788 to 6539805 17 + TSS region transcription start site region 5851
Tssr5852 1 6544996 to 6545036 40 + TSS region transcription start site region 5852
Tssr5853 1 6574169 to 6574193 24 + TSS region transcription start site region 5853
Tssr5854 1 6576044 to 6576089 45 + TSS region transcription start site region 5854
Tssr5855 1 6591615 to 6591623 8 + TSS region transcription start site region 5855
Tssr5856 1 6597034 to 6597040 6 + TSS region transcription start site region 5856
Tssr5857 1 6598500 to 6598504 4 + TSS region transcription start site region 5857
Tssr5858 1 6599676 to 6599686 10 + TSS region transcription start site region 5858
Tssr5859 1 6634405 to 6634416 11 + TSS region transcription start site region 5859
Tssr5860 1 6635970 to 6635992 22 + TSS region transcription start site region 5860
Tssr5861 1 6635997 to 6636014 17 + TSS region transcription start site region 5861
Tssr5862 1 6637848 to 6637873 25 + TSS region transcription start site region 5862
Tssr5863 1 6638089 to 6638124 35 + TSS region transcription start site region 5863
Tssr5864 1 6666014 to 6666026 12 + TSS region transcription start site region 5864
Tssr5865 1 6670314 to 6670321 7 + TSS region transcription start site region 5865
Tssr5866 1 6671897 to 6671935 38 + TSS region transcription start site region 5866
Tssr5867 1 6673375 to 6673380 5 + TSS region transcription start site region 5867
Tssr5868 1 6674109 to 6674131 22 + TSS region transcription start site region 5868
Tssr5869 1 6707861 to 6707878 17 + TSS region transcription start site region 5869
Tssr5870 1 6730105 to 6730117 12 + TSS region transcription start site region 5870
Tssr5871 1 6730124 to 6730134 10 + TSS region transcription start site region 5871
Tssr5872 1 6730135 to 6730151 16 + TSS region transcription start site region 5872
Tssr5873 1 6734827 to 6734874 47 + TSS region transcription start site region 5873
Tssr5874 1 6734902 to 6734926 24 + TSS region transcription start site region 5874
Tssr5875 1 6749237 to 6749238 1 + TSS region transcription start site region 5875
Tssr5876 1 6842004 to 6842028 24 + TSS region transcription start site region 5876
Gm42492 1 6861237 to 6864151 2914 - unclassified gene predicted gene 42492
Gm7449 1 6910560 to 6911222 662 + pseudogene predicted gene 7449
Tssr5877 1 6916534 to 6916536 2 + TSS region transcription start site region 5877
Gm37108 1 6916559 to 6923588 7029 + pseudogene predicted gene, 37108
Gm37275 1 6929759 to 6929788 29 + pseudogene predicted gene, 37275
Tssr5878 1 6995220 to 6995221 1 + TSS region transcription start site region 5878
Gm37225 1 6998217 to 6998541 324 + pseudogene predicted gene, 37225
Gm37489 1 7013762 to 7013920 158 + pseudogene predicted gene, 37489
Gm5694 1 7035915 to 7037217 1302 + pseudogene predicted gene 5694
Tssr5879 1 7068363 to 7068364 1 + TSS region transcription start site region 5879
Cpgi20 1 7088385 to 7089443 1058 CpG island CpG island 20
Tssr10911 1 7088711 to 7088718 7 - TSS region transcription start site region 10911
Tssr10912 1 7088740 to 7088782 42 - TSS region transcription start site region 10912
Tssr5880 1 7088917 to 7088993 76 + TSS region transcription start site region 5880
Pcmtd1 1 7088920 to 7173628 84708 + protein coding gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
Tssr5881 1 7088998 to 7089077 79 + TSS region transcription start site region 5881
Tssr5882 1 7089101 to 7089117 16 + TSS region transcription start site region 5882
Tssr5883 1 7089130 to 7089178 48 + TSS region transcription start site region 5883
Tssr5884 1 7089187 to 7089200 13 + TSS region transcription start site region 5884
Tssr5885 1 7098126 to 7098131 5 + TSS region transcription start site region 5885
Tssr5886 1 7111646 to 7111660 14 + TSS region transcription start site region 5886
Tssr5887 1 7119819 to 7119825 6 + TSS region transcription start site region 5887
Tssr3 1 7130807 to 7130811 4 + TSS region transcription start site region 3
Gm26983 1 7136199 to 7136586 387 - pseudogene predicted gene, 26983
Tssr10913 1 7136613 to 7136616 3 - TSS region transcription start site region 10913
Gm38372 1 7148110 to 7152137 4027 + unclassified gene predicted gene, 38372
Tssr5888 1 7177671 to 7177679 8 + TSS region transcription start site region 5888
Gm9826 1 7177739 to 7179037 1298 + pseudogene predicted gene 9826
Nras-ps2 1 7189742 to 7189919 177 - pseudogene neuroblastoma ras oncogene, pseudogene 2
Tssr5889 1 7204211 to 7204213 2 + TSS region transcription start site region 5889
Gm23274 1 7265803 to 7265932 129 + snoRNA gene predicted gene, 23274
D1Mit428 1 7267494 to 7267606 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 428
D1Mit428.2 1 7267575 to 7267701 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 428.2
Gm19002 1 7315451 to 7316462 1011 + pseudogene predicted gene, 19002
Gm26901 1 7349406 to 7397869 48463 - lincRNA gene predicted gene, 26901
Tssr10914 1 7397072 to 7397076 4 - TSS region transcription start site region 10914
Cpgi21 1 7397680 to 7398709 1029 CpG island CpG island 21
Gm18984 1 7411181 to 7411996 815 + pseudogene predicted gene, 18984
Gm30414 1 7497968 to 7518149 20181 + lincRNA gene predicted gene, 30414
Gm37791 1 7591646 to 7591931 285 + pseudogene predicted gene, 37791
Gm7470 1 7597379 to 7599473 2094 + pseudogene predicted gene 7470
Rps2-ps2 1 7664081 to 7664961 880 + pseudogene ribosomal protein S2, pseudogene 2
Gm38216 1 7728861 to 7730565 1704 - pseudogene predicted gene, 38216
Gm17903 1 7767622 to 7768739 1117 - pseudogene predicted gene, 17903
Gm39589 1 8108629 to 8122449 13820 - lncRNA gene predicted gene, 39589
Alcp25 1 8132782 to 8132961 179 QTL alcohol preference locus 25, male specific
D1Mit65 1 8132782 to 8132961 179 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 65
Cia20 1 8132782 to 8132961 179 QTL collagen induced arthritis QTL 20
Sntg1 1 8361475 to 9299878 938403 - protein coding gene syntrophin, gamma 1
Gm38024 1 8450960 to 8453491 2531 - unclassified gene predicted gene, 38024
Gm16284 1 8468426 to 8468825 399 - pseudogene predicted gene 16284
Gm38259 1 8527780 to 8531313 3533 - unclassified gene predicted gene, 38259
Gm23358 1 8588615 to 8588724 109 - miRNA gene predicted gene, 23358
Gm37005 1 8643696 to 8644859 1163 - unclassified gene predicted gene, 37005
Gm15452 1 8791923 to 8792162 239 - pseudogene predicted gene 15452
Gm36964 1 8815842 to 8816039 197 + pseudogene predicted gene, 36964
Gm24276 1 8816138 to 8816247 109 + miRNA gene predicted gene, 24276
Gm6152 1 8855928 to 8856267 339 - pseudogene predicted gene 6152
Gm7445 1 8856763 to 8857102 339 + pseudogene predicted gene 7445
Tssr5890 1 8936384 to 8936402 18 + TSS region transcription start site region 5890
Tssr5891 1 8936405 to 8936416 11 + TSS region transcription start site region 5891
Gm7493 1 8962996 to 8963621 625 - pseudogene predicted gene 7493
Gm37629 1 9191067 to 9192116 1049 - unclassified gene predicted gene, 37629
Gm38008 1 9258617 to 9259134 517 - pseudogene predicted gene, 38008
Gm37143 1 9286922 to 9290180 3258 + unclassified gene predicted gene, 37143
Tssr10915 1 9298499 to 9298512 13 - TSS region transcription start site region 10915
Cpgi22 1 9298685 to 9300179 1494 CpG island CpG island 22
Tssr10916 1 9298821 to 9298878 57 - TSS region transcription start site region 10916
Tssr10917 1 9299251 to 9299306 55 - TSS region transcription start site region 10917
Tssr10918 1 9299669 to 9299689 20 - TSS region transcription start site region 10918
Tssr5892 1 9377649 to 9377653 4 + TSS region transcription start site region 5892
Gm6187 1 9396668 to 9398567 1899 - pseudogene predicted gene 6187
Gm30719 1 9437054 to 9438070 1016 + lncRNA gene predicted gene, 30719
Gm18299 1 9439741 to 9440376 635 - pseudogene predicted gene, 18299
Gm7512 1 9450579 to 9451748 1169 + pseudogene predicted gene 7512
Tssr5893 1 9450588 to 9450594 6 + TSS region transcription start site region 5893
Gm24765 1 9458670 to 9458772 102 + snRNA gene predicted gene, 24765
Gm18300 1 9499359 to 9501514 2155 - pseudogene predicted gene, 18300
Cpgi23 1 9545047 to 9546239 1192 CpG island CpG island 23
Tssr5894 1 9545379 to 9545388 9 + TSS region transcription start site region 5894
Tssr5895 1 9545397 to 9545479 82 + TSS region transcription start site region 5895
Rrs1 1 9545408 to 9547455 2047 + protein coding gene ribosome biogenesis regulator 1
Tssr5896 1 9545489 to 9545495 6 + TSS region transcription start site region 5896
Tssr5897 1 9545921 to 9545988 67 + TSS region transcription start site region 5897
Adhfe1 1 9547935 to 9577968 30033 + protein coding gene alcohol dehydrogenase, iron containing, 1
Tssr5898 1 9548049 to 9548101 52 + TSS region transcription start site region 5898
Tssr5899 1 9548114 to 9548125 11 + TSS region transcription start site region 5899
2610203C22Rik 1 9560832 to 9631092 70260 - lncRNA gene RIKEN cDNA 2610203C22 gene
Gm6161 1 9574548 to 9575649 1101 + pseudogene predicted gene 6161
Tssr5900 1 9601135 to 9601144 9 + TSS region transcription start site region 5900
Tssr5901 1 9601163 to 9601256 93 + TSS region transcription start site region 5901
Tssr5902 1 9601263 to 9601310 47 + TSS region transcription start site region 5902
Vxn 1 9601267 to 9627142 25875 + protein coding gene vexin
Tssr5903 1 9601311 to 9601325 14 + TSS region transcription start site region 5903
Tssr5904 1 9601336 to 9601348 12 + TSS region transcription start site region 5904
Tssr5905 1 9601456 to 9601487 31 + TSS region transcription start site region 5905
Tssr5906 1 9601491 to 9601504 13 + TSS region transcription start site region 5906
Tssr10919 1 9631101 to 9631116 15 - TSS region transcription start site region 10919
Tssr10920 1 9631149 to 9631173 24 - TSS region transcription start site region 10920
Tssr10921 1 9631175 to 9631189 14 - TSS region transcription start site region 10921
Tssr10922 1 9636888 to 9636901 13 - TSS region transcription start site region 10922
Gm29520 1 9639255 to 9640582 1327 - lincRNA gene predicted gene 29520
Cpgi24 1 9649309 to 9649468 159 CpG island CpG island 24
Mybl1 1 9667415 to 9700209 32794 - protein coding gene myeloblastosis oncogene-like 1
Tssr10923 1 9667700 to 9667701 1 - TSS region transcription start site region 10923
Tssr10924 1 9682206 to 9682208 2 - TSS region transcription start site region 10924
Tssr10925 1 9685535 to 9685539 4 - TSS region transcription start site region 10925
Tssr10926 1 9696863 to 9696874 11 - TSS region transcription start site region 10926
Cpgi25 1 9699664 to 9701102 1438 CpG island CpG island 25
Tssr10927 1 9700317 to 9700329 12 - TSS region transcription start site region 10927
Tssr10928 1 9700343 to 9700386 43 - TSS region transcription start site region 10928
Tssr10929 1 9700393 to 9700412 19 - TSS region transcription start site region 10929
Vcpip1 1 9718622 to 9748382 29760 - protein coding gene valosin containing protein (p97)/p47 complex interacting protein 1
Tssr10930 1 9721364 to 9721398 34 - TSS region transcription start site region 10930
Tssr10931 1 9721404 to 9721416 12 - TSS region transcription start site region 10931
Tssr10932 1 9721455 to 9721503 48 - TSS region transcription start site region 10932
Tssr10933 1 9725930 to 9725934 4 - TSS region transcription start site region 10933
Tssr10934 1 9736594 to 9736597 3 - TSS region transcription start site region 10934
Tssr10935 1 9745571 to 9745598 27 - TSS region transcription start site region 10935
Tssr10936 1 9746493 to 9746513 20 - TSS region transcription start site region 10936
Cpgi26 1 9747453 to 9748748 1295 CpG island CpG island 26
1700034P13Rik 1 9747648 to 9771256 23608 + antisense lncRNA gene RIKEN cDNA 1700034P13 gene
Tssr10937 1 9748227 to 9748243 16 - TSS region transcription start site region 10937
Tssr10938 1 9748247 to 9748272 25 - TSS region transcription start site region 10938
Tssr10939 1 9748277 to 9748320 43 - TSS region transcription start site region 10939
Tssr10940 1 9748330 to 9748353 23 - TSS region transcription start site region 10940
Tssr10941 1 9748355 to 9748367 12 - TSS region transcription start site region 10941
Tssr10942 1 9748376 to 9748451 75 - TSS region transcription start site region 10942
D1Mit296 1 9749730 to 9749873 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 296
D1Mit58 1 9757119 to 9757372 253 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58
D1Mit58.2 1 9757246 to 9757363 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58.2
Tssr5907 1 9759104 to 9759112 8 + TSS region transcription start site region 5907
Gm39590 1 9775558 to 9791319 15761 + lncRNA gene predicted gene, 39590
Tssr5908 1 9783723 to 9783735 12 + TSS region transcription start site region 5908
Tssr5909 1 9788396 to 9788407 11 + TSS region transcription start site region 5909
Tssr5910 1 9788409 to 9788420 11 + TSS region transcription start site region 5910
Cpgi27 1 9797682 to 9798751 1069 CpG island CpG island 27
Tssr5911 1 9797795 to 9797809 14 + TSS region transcription start site region 5911
Tssr5912 1 9797812 to 9797823 11 + TSS region transcription start site region 5912
Tssr5913 1 9797986 to 9798040 54 + TSS region transcription start site region 5913
Sgk3 1 9798107 to 9900845 102738 + protein coding gene serum/glucocorticoid regulated kinase 3
Tssr5914 1 9798123 to 9798216 93 + TSS region transcription start site region 5914
Tssr10943 1 9798985 to 9798996 11 - TSS region transcription start site region 10943
Tssr5915 1 9799172 to 9799220 48 + TSS region transcription start site region 5915
Tssr10944 1 9799351 to 9799373 22 - TSS region transcription start site region 10944
Gm6195 1 9802197 to 9802553 356 - pseudogene predicted pseudogene 6195
Tssr5916 1 9807006 to 9807014 8 + TSS region transcription start site region 5916