Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:58417806-58691323

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clk1 1 58411988 to 58424088 12100 - protein coding gene CDC-like kinase 1
Tssr11776 1 58419995 to 58420006 11 - TSS region transcription start site region 11776
Tssr11777 1 58420315 to 58420331 16 - TSS region transcription start site region 11777
Tssr11778 1 58422844 to 58422849 5 - TSS region transcription start site region 11778
Cpgi278 1 58423327 to 58424273 946 CpG island CpG island 278
Tssr11779 1 58424007 to 58424028 21 - TSS region transcription start site region 11779
Tssr11780 1 58424042 to 58424064 22 - TSS region transcription start site region 11780
Ppil3 1 58430994 to 58445486 14492 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 3
Tssr6776 1 58431398 to 58431400 2 + TSS region transcription start site region 6776
Cpgi279 1 58445066 to 58445703 637 CpG island CpG island 279
Nif3l1 1 58445156 to 58462276 17120 + protein coding gene Ngg1 interacting factor 3-like 1 (S. pombe)
Tssr11781 1 58445161 to 58445202 41 - TSS region transcription start site region 11781
Tssr6777 1 58445259 to 58445307 48 + TSS region transcription start site region 6777
Tssr11782 1 58445406 to 58445491 85 - TSS region transcription start site region 11782
Tssr6778 1 58445510 to 58445528 18 + TSS region transcription start site region 6778
Tssr6779 1 58445531 to 58445618 87 + TSS region transcription start site region 6779
Tssr92 1 58449526 to 58449532 6 + TSS region transcription start site region 92
Orc2 1 58462771 to 58505109 42338 - protein coding gene origin recognition complex, subunit 2
Gm23966 1 58466515 to 58466621 106 - snRNA gene predicted gene, 23966
Cpgi280 1 58504434 to 58505244 810 CpG island CpG island 280
Tssr11783 1 58504919 to 58504942 23 - TSS region transcription start site region 11783
Tssr11784 1 58504946 to 58504965 19 - TSS region transcription start site region 11784
Tssr6780 1 58505135 to 58505162 27 + TSS region transcription start site region 6780
Gm15834 1 58505148 to 58523230 18082 + lincRNA gene predicted gene 15834
Fam126b 1 58522806 to 58586323 63517 - protein coding gene family with sequence similarity 126, member B
Tssr11785 1 58581973 to 58581978 5 - TSS region transcription start site region 11785
D1Mit324 1 58583625 to 58583862 237 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 324
Cpgi281 1 58585808 to 58586797 989 CpG island CpG island 281
Tssr11786 1 58586240 to 58586318 78 - TSS region transcription start site region 11786
Tssr6781 1 58586381 to 58586401 20 + TSS region transcription start site region 6781
Ndufb3 1 58586397 to 58595964 9567 + protein coding gene NADH:ubiquinone oxidoreductase subunit B3
Tssr6782 1 58586405 to 58586446 41 + TSS region transcription start site region 6782
Tssr6783 1 58586591 to 58586625 34 + TSS region transcription start site region 6783
Tssr93 1 58586628 to 58586641 13 + TSS region transcription start site region 93
Gm29389 1 58625214 to 58625565 351 - pseudogene predicted gene 29389
Gm18802 1 58636760 to 58637347 587 + pseudogene predicted gene, 18802
Cbx3-ps7 1 58646688 to 58647239 551 + pseudogene chromobox 3, pseudogene 7
Cpgi282 1 58652487 to 58652978 491 CpG island CpG island 282
Tssr6784 1 58652588 to 58652626 38 + TSS region transcription start site region 6784
Gm20257 1 58652641 to 58655831 3190 + pseudogene predicted gene, 20257
Flacc1 1 58656926 to 58696009 39083 - protein coding gene flagellum associated containing coiled-coil domains 1