Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:36322291-36472110

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arid5a 1 36307733 to 36324029 16296 + protein coding gene AT rich interactive domain 5A (MRF1-like)
Tssr37 1 36325805 to 36325815 10 - TSS region transcription start site region 37
Tssr6259 1 36332692 to 36332699 7 + TSS region transcription start site region 6259
Tssr6260 1 36332702 to 36332709 7 + TSS region transcription start site region 6260
4930403P22Rik 1 36332708 to 36333420 712 + lincRNA gene RIKEN cDNA 4930403P22 gene
Tssr11253 1 36333593 to 36333598 5 - TSS region transcription start site region 11253
Kansl3 1 36335730 to 36369181 33451 - protein coding gene KAT8 regulatory NSL complex subunit 3
Tssr38 1 36340874 to 36340876 2 - TSS region transcription start site region 38
Tssr39 1 36345105 to 36345120 15 - TSS region transcription start site region 39
Mir6898 1 36348682 to 36348758 76 - miRNA gene microRNA 6898
Cpgi140 1 36368514 to 36369602 1088 CpG island CpG island 140
Tssr11254 1 36369094 to 36369107 13 - TSS region transcription start site region 11254
Tssr11255 1 36369121 to 36369159 38 - TSS region transcription start site region 11255
Tssr11256 1 36369173 to 36369186 13 - TSS region transcription start site region 11256
Tssr6261 1 36372187 to 36372192 5 + TSS region transcription start site region 6261
Tssr6262 1 36372198 to 36372208 10 + TSS region transcription start site region 6262
Tssr6263 1 36372210 to 36372220 10 + TSS region transcription start site region 6263
Tssr6264 1 36372231 to 36372241 10 + TSS region transcription start site region 6264
Fer1l5 1 36372291 to 36422110 49819 + protein coding gene fer-1-like 5 (C. elegans)
Tssr6265 1 36384491 to 36384494 3 + TSS region transcription start site region 6265
Cpgi141 1 36408484 to 36408924 440 CpG island CpG island 141
Lman2l 1 36422063 to 36445272 23209 - protein coding gene lectin, mannose-binding 2-like
Cpgi142 1 36444716 to 36445452 736 CpG island CpG island 142
Tssr11257 1 36445231 to 36445242 11 - TSS region transcription start site region 11257
Tssr11258 1 36445248 to 36445264 16 - TSS region transcription start site region 11258
Gm33401 1 36461978 to 36462873 895 + lncRNA gene predicted gene, 33401
Tssr6266 1 36461996 to 36462007 11 + TSS region transcription start site region 6266
Gm33454 1 36464718 to 36471546 6828 - lncRNA gene predicted gene, 33454
Cpgi143 1 36471073 to 36472494 1421 CpG island CpG island 143
Tssr6267 1 36471590 to 36471606 16 + TSS region transcription start site region 6267
Cnnm4 1 36471620 to 36508764 37144 + protein coding gene cyclin M4